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Protein

Probable glutamate dehydrogenase

Gene

NGR_a01340

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei86 – 861By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NADP

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5511-MONOMER.
RETL1328306-WGS:GSTH-6401-MONOMER.
RETL1328306-WGS:GSTH-6459-MONOMER.
SFRE394:GBYN-6185-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable glutamate dehydrogenase (EC:1.4.1.3)
Short name:
GDH
Gene namesi
Ordered Locus Names:NGR_a01340
ORF Names:y4uF
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 443443Probable glutamate dehydrogenasePRO_0000182753Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ53199.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0334.
HOGENOMiHOG000243801.
KOiK00261.
OMAiELEHITR.
OrthoDBiEOG65XN4D.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR006095. Glu/Leu/Phe/Val_DH.
IPR006096. Glu/Leu/Phe/Val_DH_C.
IPR006097. Glu/Leu/Phe/Val_DH_dimer_dom.
IPR014362. Glu_DH.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00208. ELFV_dehydrog. 1 hit.
PF02812. ELFV_dehydrog_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000185. Glu_DH. 1 hit.
PRINTSiPR00082. GLFDHDRGNASE.
SMARTiSM00839. ELFV_dehydrog. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53199-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFLDLPEGL PERIIQCNSP YTVRFGVRLR GRMYSFIGWR SVREHCEPVK
60 70 80 90 100
GDIRYASNAD AEEVEALAAL MTLKCSLVDV PFGGSKGALK IDPRGWTPQE
110 120 130 140 150
LEHITRRFTQ EMNKRPDRAR RQCVGSDIGT GEREMAWMMD EFRRANPTDV
160 170 180 190 200
VTSGACVTGK PLSKGGIAGR AESTGRGVQF AIQSSLRDTR TPGLDGRRNL
210 220 230 240 250
KGASTVIQGF GNVGYHAARF LSEEDDARVT VLAERDGYVA NPEGLSIEAL
260 270 280 290 300
KQHQIRTGSI LGFDGAKSIA GDMCGVEQPC DVLIPAAMEN AIHAENAERM
310 320 330 340 350
KAHLVVEAAN GPVTFEADEI LRSRGVTILP DLYVNAGGVV VSYFERVKNL
360 370 380 390 400
THIPFGLMER RRRERGNHTI ATALERMTGK ESPADMRDEF LEGGAEIDLV
410 420 430 440
RSGLEDVMRS TWTRIADLME QQPELGDYRT AAYVASIRQV ADL
Length:443
Mass (Da):48,845
Last modified:November 1, 1996 - v1
Checksum:i3D61C9122A9523BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92406.1.
U00090 Genomic DNA. Translation: AAB91878.1.
RefSeqiNP_444091.1. NC_000914.2.
WP_010875172.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91878; AAB91878; NGR_a01340.
GeneIDi962463.
KEGGirhi:NGR_a01340.
PATRICi32300963. VBIRhiSp122450_0117.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92406.1.
U00090 Genomic DNA. Translation: AAB91878.1.
RefSeqiNP_444091.1. NC_000914.2.
WP_010875172.1. NC_000914.2.

3D structure databases

ProteinModelPortaliQ53199.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91878; AAB91878; NGR_a01340.
GeneIDi962463.
KEGGirhi:NGR_a01340.
PATRICi32300963. VBIRhiSp122450_0117.

Phylogenomic databases

eggNOGiCOG0334.
HOGENOMiHOG000243801.
KOiK00261.
OMAiELEHITR.
OrthoDBiEOG65XN4D.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5511-MONOMER.
RETL1328306-WGS:GSTH-6401-MONOMER.
RETL1328306-WGS:GSTH-6459-MONOMER.
SFRE394:GBYN-6185-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR006095. Glu/Leu/Phe/Val_DH.
IPR006096. Glu/Leu/Phe/Val_DH_C.
IPR006097. Glu/Leu/Phe/Val_DH_dimer_dom.
IPR014362. Glu_DH.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PfamiPF00208. ELFV_dehydrog. 1 hit.
PF02812. ELFV_dehydrog_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000185. Glu_DH. 1 hit.
PRINTSiPR00082. GLFDHDRGNASE.
SMARTiSM00839. ELFV_dehydrog. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiDHE3_RHISN
AccessioniPrimary (citable) accession number: Q53199
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: June 24, 2015
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.