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Q53196 (Y4UB_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized aminotransferase y4uB

EC=2.6.1.-
Gene names
Ordered Locus Names:NGR_a01380
ORF Names:y4uB
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length467 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate Potential.

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

Ontologies

Keywords
   LigandPyridoxal phosphate
   Molecular functionAminotransferase
Transferase
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Molecular_functionpyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

transaminase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 467467Uncharacterized aminotransferase y4uB
PRO_0000120539

Amino acid modifications

Modified residue2901N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q53196 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 71A96CEB73F9AFBA

FASTA46751,005
        10         20         30         40         50         60 
MTIDIKDISE KDRNTVLHPF TQLKDFATGK LREPTIVETG KGIRIQDARG NQLIDGFAGL 

        70         80         90        100        110        120 
YCVNVGYGRT EVAEAISRQA YRLAYYHSYA AHTTDELAIL SDRLVKMAPG KMSKVFYGMS 

       130        140        150        160        170        180 
GSDANETQAK LVWYYNNLRG KPTKKKIISR ERGYHGCSVV SGSMTGMSFY HDHMDLPLPQ 

       190        200        210        220        230        240 
ICHTGVPHHY WGANPGETER EFSARRAAEL DEMIETLGPD NVGAFIAEPV LGTGGITPPP 

       250        260        270        280        290        300 
EGYWEAIQAV LKKHDVLLIA DEVITGFGRT GSMFGSQHYG IEPDLITVAK GLTSAYFPLS 

       310        320        330        340        350        360 
ASIVGEKVYK VLEDGADRVG AFSHGYTYSG HPIGAAAANA VLDIVEKEDL PGNAREVGGY 

       370        380        390        400        410        420 
FQAQLKEKFA QLPIVGEVRG VGLMGAIEFV GDRENKKRFD PLLKVGARVS KAARDRGLIA 

       430        440        450        460 
RAMPHGDILG FAPPLVTTKE EVDEIVAMAE KAVRSVMDEL VRDGQKL 

« Hide

References

« Hide 'large scale' references
[1]"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
Freiberg C., Perret X., Broughton W.J., Rosenthal A.
Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[3]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z68203 Genomic DNA. Translation: CAA92403.1.
U00090 Genomic DNA. Translation: AAB91874.1.
RefSeqNP_444087.1. NC_000914.2.

3D structure databases

ProteinModelPortalQ53196.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01380.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91874; AAB91874; NGR_a01380.
GeneID962455.
KEGGrhi:NGR_a01380.
PATRIC32300977. VBIRhiSp122450_0124.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0161.
HOGENOMHOG000020207.
KOK15785.
OMAGNAREVG.
OrthoDBEOG6W71WN.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-2155-MONOMER.
RETL1328306-WGS:GSTH-4803-MONOMER.
RETL1328306-WGS:GSTH-5509-MONOMER.
RETL1328306-WGS:GSTH-6453-MONOMER.
RETL1328306-WGS:GSTH-6495-MONOMER.
SFRE394:GBYN-6189-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMSSF53383. SSF53383. 1 hit.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4UB_RHISN
AccessionPrimary (citable) accession number: Q53196
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names