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Q53196

- Y4UB_RHISN

UniProt

Q53196 - Y4UB_RHISN

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Protein

Uncharacterized aminotransferase y4uB

Gene
NGR_a01380, y4uB
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate Reviewed prediction.

GO - Molecular functioni

  1. pyridoxal phosphate binding Source: InterPro
  2. transaminase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-2155-MONOMER.
RETL1328306-WGS:GSTH-4803-MONOMER.
RETL1328306-WGS:GSTH-5509-MONOMER.
RETL1328306-WGS:GSTH-6453-MONOMER.
RETL1328306-WGS:GSTH-6495-MONOMER.
SFRE394:GBYN-6189-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized aminotransferase y4uB (EC:2.6.1.-)
Gene namesi
Ordered Locus Names:NGR_a01380
ORF Names:y4uB
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 467467Uncharacterized aminotransferase y4uBPRO_0000120539Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei290 – 2901N6-(pyridoxal phosphate)lysine By similarity

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01380.

Structurei

3D structure databases

ProteinModelPortaliQ53196.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0161.
HOGENOMiHOG000020207.
KOiK15785.
OMAiGNAREVG.
OrthoDBiEOG6W71WN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53196-1 [UniParc]FASTAAdd to Basket

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MTIDIKDISE KDRNTVLHPF TQLKDFATGK LREPTIVETG KGIRIQDARG    50
NQLIDGFAGL YCVNVGYGRT EVAEAISRQA YRLAYYHSYA AHTTDELAIL 100
SDRLVKMAPG KMSKVFYGMS GSDANETQAK LVWYYNNLRG KPTKKKIISR 150
ERGYHGCSVV SGSMTGMSFY HDHMDLPLPQ ICHTGVPHHY WGANPGETER 200
EFSARRAAEL DEMIETLGPD NVGAFIAEPV LGTGGITPPP EGYWEAIQAV 250
LKKHDVLLIA DEVITGFGRT GSMFGSQHYG IEPDLITVAK GLTSAYFPLS 300
ASIVGEKVYK VLEDGADRVG AFSHGYTYSG HPIGAAAANA VLDIVEKEDL 350
PGNAREVGGY FQAQLKEKFA QLPIVGEVRG VGLMGAIEFV GDRENKKRFD 400
PLLKVGARVS KAARDRGLIA RAMPHGDILG FAPPLVTTKE EVDEIVAMAE 450
KAVRSVMDEL VRDGQKL 467
Length:467
Mass (Da):51,005
Last modified:November 1, 1996 - v1
Checksum:i71A96CEB73F9AFBA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z68203 Genomic DNA. Translation: CAA92403.1.
U00090 Genomic DNA. Translation: AAB91874.1.
RefSeqiNP_444087.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91874; AAB91874; NGR_a01380.
GeneIDi962455.
KEGGirhi:NGR_a01380.
PATRICi32300977. VBIRhiSp122450_0124.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Z68203 Genomic DNA. Translation: CAA92403.1 .
U00090 Genomic DNA. Translation: AAB91874.1 .
RefSeqi NP_444087.1. NC_000914.2.

3D structure databases

ProteinModelPortali Q53196.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01380.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91874 ; AAB91874 ; NGR_a01380 .
GeneIDi 962455.
KEGGi rhi:NGR_a01380.
PATRICi 32300977. VBIRhiSp122450_0124.

Phylogenomic databases

eggNOGi COG0161.
HOGENOMi HOG000020207.
KOi K15785.
OMAi GNAREVG.
OrthoDBi EOG6W71WN.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-2155-MONOMER.
RETL1328306-WGS:GSTH-4803-MONOMER.
RETL1328306-WGS:GSTH-5509-MONOMER.
RETL1328306-WGS:GSTH-6453-MONOMER.
RETL1328306-WGS:GSTH-6495-MONOMER.
SFRE394:GBYN-6189-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProi IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
PANTHERi PTHR11986. PTHR11986. 1 hit.
Pfami PF00202. Aminotran_3. 1 hit.
[Graphical view ]
PIRSFi PIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMi SSF53383. SSF53383. 1 hit.
PROSITEi PS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4UB_RHISN
AccessioniPrimary (citable) accession number: Q53196
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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