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Q53196

- Y4UB_RHISN

UniProt

Q53196 - Y4UB_RHISN

Protein

Uncharacterized aminotransferase y4uB

Gene

NGR_a01380

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Cofactori

    Pyridoxal phosphate.Curated

    GO - Molecular functioni

    1. pyridoxal phosphate binding Source: InterPro
    2. transaminase activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Aminotransferase, Transferase

    Keywords - Ligandi

    Pyridoxal phosphate

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-2155-MONOMER.
    RETL1328306-WGS:GSTH-4803-MONOMER.
    RETL1328306-WGS:GSTH-5509-MONOMER.
    RETL1328306-WGS:GSTH-6453-MONOMER.
    RETL1328306-WGS:GSTH-6495-MONOMER.
    SFRE394:GBYN-6189-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized aminotransferase y4uB (EC:2.6.1.-)
    Gene namesi
    Ordered Locus Names:NGR_a01380
    ORF Names:y4uB
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 467467Uncharacterized aminotransferase y4uBPRO_0000120539Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei290 – 2901N6-(pyridoxal phosphate)lysineBy similarity

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01380.

    Structurei

    3D structure databases

    ProteinModelPortaliQ53196.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG0161.
    HOGENOMiHOG000020207.
    KOiK15785.
    OMAiGNAREVG.
    OrthoDBiEOG6W71WN.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 2 hits.
    InterProiIPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PANTHERiPTHR11986. PTHR11986. 1 hit.
    PfamiPF00202. Aminotran_3. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMiSSF53383. SSF53383. 1 hit.
    PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q53196-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTIDIKDISE KDRNTVLHPF TQLKDFATGK LREPTIVETG KGIRIQDARG    50
    NQLIDGFAGL YCVNVGYGRT EVAEAISRQA YRLAYYHSYA AHTTDELAIL 100
    SDRLVKMAPG KMSKVFYGMS GSDANETQAK LVWYYNNLRG KPTKKKIISR 150
    ERGYHGCSVV SGSMTGMSFY HDHMDLPLPQ ICHTGVPHHY WGANPGETER 200
    EFSARRAAEL DEMIETLGPD NVGAFIAEPV LGTGGITPPP EGYWEAIQAV 250
    LKKHDVLLIA DEVITGFGRT GSMFGSQHYG IEPDLITVAK GLTSAYFPLS 300
    ASIVGEKVYK VLEDGADRVG AFSHGYTYSG HPIGAAAANA VLDIVEKEDL 350
    PGNAREVGGY FQAQLKEKFA QLPIVGEVRG VGLMGAIEFV GDRENKKRFD 400
    PLLKVGARVS KAARDRGLIA RAMPHGDILG FAPPLVTTKE EVDEIVAMAE 450
    KAVRSVMDEL VRDGQKL 467
    Length:467
    Mass (Da):51,005
    Last modified:November 1, 1996 - v1
    Checksum:i71A96CEB73F9AFBA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92403.1.
    U00090 Genomic DNA. Translation: AAB91874.1.
    RefSeqiNP_444087.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91874; AAB91874; NGR_a01380.
    GeneIDi962455.
    KEGGirhi:NGR_a01380.
    PATRICi32300977. VBIRhiSp122450_0124.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. Translation: CAA92403.1 .
    U00090 Genomic DNA. Translation: AAB91874.1 .
    RefSeqi NP_444087.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali Q53196.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01380.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91874 ; AAB91874 ; NGR_a01380 .
    GeneIDi 962455.
    KEGGi rhi:NGR_a01380.
    PATRICi 32300977. VBIRhiSp122450_0124.

    Phylogenomic databases

    eggNOGi COG0161.
    HOGENOMi HOG000020207.
    KOi K15785.
    OMAi GNAREVG.
    OrthoDBi EOG6W71WN.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-2155-MONOMER.
    RETL1328306-WGS:GSTH-4803-MONOMER.
    RETL1328306-WGS:GSTH-5509-MONOMER.
    RETL1328306-WGS:GSTH-6453-MONOMER.
    RETL1328306-WGS:GSTH-6495-MONOMER.
    SFRE394:GBYN-6189-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 2 hits.
    InterProi IPR005814. Aminotrans_3.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    PANTHERi PTHR11986. PTHR11986. 1 hit.
    Pfami PF00202. Aminotran_3. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
    SUPFAMi SSF53383. SSF53383. 1 hit.
    PROSITEi PS00600. AA_TRANSFER_CLASS_3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
      Freiberg C., Perret X., Broughton W.J., Rosenthal A.
      Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4UB_RHISN
    AccessioniPrimary (citable) accession number: Q53196
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 79 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3