Q53196 (Y4UB_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized aminotransferase y4uB
EC=2.6.1.-

Gene names

Ordered Locus Names:	NGR_a01380
ORF Names:	y4uB

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	467 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate Potential.
Sequence similarities	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Molecular function	Aminotransferase Transferase
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	metabolic process Inferred from electronic annotation. Source: GOC
Molecular_function	pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 467	467	Uncharacterized aminotransferase y4uB		PRO_0000120539
Amino acid modifications
	Modified residue	290	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q53196 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 71A96CEB73F9AFBA	FASTA	467	51,005
	10 20 30 40 50 60 MTIDIKDISE KDRNTVLHPF TQLKDFATGK LREPTIVETG KGIRIQDARG NQLIDGFAGL 70 80 90 100 110 120 YCVNVGYGRT EVAEAISRQA YRLAYYHSYA AHTTDELAIL SDRLVKMAPG KMSKVFYGMS 130 140 150 160 170 180 GSDANETQAK LVWYYNNLRG KPTKKKIISR ERGYHGCSVV SGSMTGMSFY HDHMDLPLPQ 190 200 210 220 230 240 ICHTGVPHHY WGANPGETER EFSARRAAEL DEMIETLGPD NVGAFIAEPV LGTGGITPPP 250 260 270 280 290 300 EGYWEAIQAV LKKHDVLLIA DEVITGFGRT GSMFGSQHYG IEPDLITVAK GLTSAYFPLS 310 320 330 340 350 360 ASIVGEKVYK VLEDGADRVG AFSHGYTYSG HPIGAAAANA VLDIVEKEDL PGNAREVGGY 370 380 390 400 410 420 FQAQLKEKFA QLPIVGEVRG VGLMGAIEFV GDRENKKRFD PLLKVGARVS KAARDRGLIA 430 440 450 460 RAMPHGDILG FAPPLVTTKE EVDEIVAMAE KAVRSVMDEL VRDGQKL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning." Freiberg C., Perret X., Broughton W.J., Rosenthal A. Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
[3]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z68203 Genomic DNA. Translation: CAA92403.1. U00090 Genomic DNA. Translation: AAB91874.1.
RefSeq	NP_444087.1. NC_000914.2.
3D structure databases
ProteinModelPortal	Q53196.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a01380.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91874; AAB91874; NGR_a01380.
GeneID	962455.
KEGG	rhi:NGR_a01380.
PATRIC	32300977. VBIRhiSp122450_0124.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0161.
HOGENOM	HOG000020207.
KO	K15785.
OMA	MAPGKMS.
ProtClustDB	PRK07482.
Enzyme and pathway databases
BioCyc	SFRE394:GBYN-6189-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 2 hits.
InterPro	IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4UB_RHISN

Accession

Primary (citable) accession number: Q53196

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1996
Last modified:	May 29, 2013
This is version 73 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program