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Protein

Uncharacterized aminotransferase y4uB

Gene

NGR_a01380

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

GO - Molecular functioni

  1. pyridoxal phosphate binding Source: InterPro
  2. transaminase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-2155-MONOMER.
RETL1328306-WGS:GSTH-4803-MONOMER.
RETL1328306-WGS:GSTH-5509-MONOMER.
RETL1328306-WGS:GSTH-6453-MONOMER.
RETL1328306-WGS:GSTH-6495-MONOMER.
SFRE394:GBYN-6189-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized aminotransferase y4uB (EC:2.6.1.-)
Gene namesi
Ordered Locus Names:NGR_a01380
ORF Names:y4uB
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 467467Uncharacterized aminotransferase y4uBPRO_0000120539Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei290 – 2901N6-(pyridoxal phosphate)lysineBy similarity

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01380.

Structurei

3D structure databases

ProteinModelPortaliQ53196.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0161.
HOGENOMiHOG000020207.
KOiK15785.
OMAiGNAREVG.
OrthoDBiEOG6W71WN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53196-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIDIKDISE KDRNTVLHPF TQLKDFATGK LREPTIVETG KGIRIQDARG
60 70 80 90 100
NQLIDGFAGL YCVNVGYGRT EVAEAISRQA YRLAYYHSYA AHTTDELAIL
110 120 130 140 150
SDRLVKMAPG KMSKVFYGMS GSDANETQAK LVWYYNNLRG KPTKKKIISR
160 170 180 190 200
ERGYHGCSVV SGSMTGMSFY HDHMDLPLPQ ICHTGVPHHY WGANPGETER
210 220 230 240 250
EFSARRAAEL DEMIETLGPD NVGAFIAEPV LGTGGITPPP EGYWEAIQAV
260 270 280 290 300
LKKHDVLLIA DEVITGFGRT GSMFGSQHYG IEPDLITVAK GLTSAYFPLS
310 320 330 340 350
ASIVGEKVYK VLEDGADRVG AFSHGYTYSG HPIGAAAANA VLDIVEKEDL
360 370 380 390 400
PGNAREVGGY FQAQLKEKFA QLPIVGEVRG VGLMGAIEFV GDRENKKRFD
410 420 430 440 450
PLLKVGARVS KAARDRGLIA RAMPHGDILG FAPPLVTTKE EVDEIVAMAE
460
KAVRSVMDEL VRDGQKL
Length:467
Mass (Da):51,005
Last modified:October 31, 1996 - v1
Checksum:i71A96CEB73F9AFBA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92403.1.
U00090 Genomic DNA. Translation: AAB91874.1.
RefSeqiNP_444087.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91874; AAB91874; NGR_a01380.
GeneIDi962455.
KEGGirhi:NGR_a01380.
PATRICi32300977. VBIRhiSp122450_0124.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92403.1.
U00090 Genomic DNA. Translation: AAB91874.1.
RefSeqiNP_444087.1. NC_000914.2.

3D structure databases

ProteinModelPortaliQ53196.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a01380.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91874; AAB91874; NGR_a01380.
GeneIDi962455.
KEGGirhi:NGR_a01380.
PATRICi32300977. VBIRhiSp122450_0124.

Phylogenomic databases

eggNOGiCOG0161.
HOGENOMiHOG000020207.
KOiK15785.
OMAiGNAREVG.
OrthoDBiEOG6W71WN.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-2155-MONOMER.
RETL1328306-WGS:GSTH-4803-MONOMER.
RETL1328306-WGS:GSTH-5509-MONOMER.
RETL1328306-WGS:GSTH-6453-MONOMER.
RETL1328306-WGS:GSTH-6495-MONOMER.
SFRE394:GBYN-6189-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4UB_RHISN
AccessioniPrimary (citable) accession number: Q53196
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 1997
Last sequence update: October 31, 1996
Last modified: January 6, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.