Q53192 (Y4TQ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable peptide ABC transporter permease protein y4tQ

Gene names

Ordered Locus Names:	NGR_a01420
ORF Names:	y4tQ

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	291 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane.
Subcellular location	Cell inner membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily. Contains 1 ABC transmembrane type-1 domain.

Ontologies

Keywords
Biological process	Amino-acid transport Transport
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	amino acid transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	transporter activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 291	291	Probable peptide ABC transporter permease protein y4tQ		PRO_0000060300
Regions
	Transmembrane	28 – 48	21	Helical; Potential
	Transmembrane	92 – 112	21	Helical; Potential
	Transmembrane	137 – 157	21	Helical; Potential
	Transmembrane	213 – 233	21	Helical; Potential
	Transmembrane	249 – 269	21	Helical; Potential
	Domain	88 – 276	189	ABC transmembrane type-1

Sequences

	Sequence		Length	Mass (Da)
	Q53192 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: CD82B7EBB91146E5	FASTA	291	30,910
	10 20 30 40 50 60 MALTTSRASG SPRIQTHTVV RIAKRHPLVL LGGGILLLLI LLALAAPLYS GDPLVMDPFK 70 80 90 100 110 120 RLQQPSASMW FGTDNLGRDV FARTIYGARI SLIVGLLSAV CAAVCGLLIG VIAGYSRTFD 130 140 150 160 170 180 NIIMRVMDGL MSIPTFLLAI ALLSLTGPGI GILIVAIAIP ETPAVTRLVR SVVLSVRSRP 190 200 210 220 230 240 YVEAALCGGA RLPRVLWRHI LPSTIPPLMV QSATVCASAI MTEAGLSFIG VGVPSEIPSW 250 260 270 280 290 GNMIANSRLF LAIAPLTIFA PGLCLAVTVL AVNLLGDGLR DMFDPRSKRR R

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning." Freiberg C., Perret X., Broughton W.J., Rosenthal A. Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
[3]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z68203 Genomic DNA. Translation: CAA92399.1. U00090 Genomic DNA. Translation: AAB91870.1.
RefSeq	NP_444083.1. NC_000914.2.
3D structure databases
ProteinModelPortal	Q53192.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a01420.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91870; AAB91870; NGR_a01420.
GeneID	962464.
KEGG	rhi:NGR_a01420.
PATRIC	32300985. VBIRhiSp122450_0128.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1173.
HOGENOM	HOG000171368.
KO	K02034.
OMA	CASAIMT.
Family and domain databases
InterPro	IPR000515. BPD_transp. [Graphical view]
Pfam	PF00528. BPD_transp_1. 1 hit. [Graphical view]
PROSITE	PS50928. ABC_TM1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4TQ_RHISN

Accession

Primary (citable) accession number: Q53192

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1996
Last modified:	May 1, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program