Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q53192 (Y4TQ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable peptide ABC transporter permease protein y4tQ
Gene names
Ordered Locus Names:NGR_a01420
ORF Names:y4tQ
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length291 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane.

Subcellular location

Cell inner membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.

Contains 1 ABC transmembrane type-1 domain.

Ontologies

Keywords
   Biological processAmino-acid transport
Transport
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processamino acid transport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontransporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 291291Probable peptide ABC transporter permease protein y4tQ
PRO_0000060300

Regions

Transmembrane28 – 4821Helical; Potential
Transmembrane92 – 11221Helical; Potential
Transmembrane137 – 15721Helical; Potential
Transmembrane213 – 23321Helical; Potential
Transmembrane249 – 26921Helical; Potential
Domain88 – 276189ABC transmembrane type-1

Sequences

Sequence LengthMass (Da)Tools
Q53192 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: CD82B7EBB91146E5

FASTA29130,910
        10         20         30         40         50         60 
MALTTSRASG SPRIQTHTVV RIAKRHPLVL LGGGILLLLI LLALAAPLYS GDPLVMDPFK 

        70         80         90        100        110        120 
RLQQPSASMW FGTDNLGRDV FARTIYGARI SLIVGLLSAV CAAVCGLLIG VIAGYSRTFD 

       130        140        150        160        170        180 
NIIMRVMDGL MSIPTFLLAI ALLSLTGPGI GILIVAIAIP ETPAVTRLVR SVVLSVRSRP 

       190        200        210        220        230        240 
YVEAALCGGA RLPRVLWRHI LPSTIPPLMV QSATVCASAI MTEAGLSFIG VGVPSEIPSW 

       250        260        270        280        290 
GNMIANSRLF LAIAPLTIFA PGLCLAVTVL AVNLLGDGLR DMFDPRSKRR R 

« Hide

References

« Hide 'large scale' references
[1]"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
Freiberg C., Perret X., Broughton W.J., Rosenthal A.
Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[3]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z68203 Genomic DNA. Translation: CAA92399.1.
U00090 Genomic DNA. Translation: AAB91870.1.
RefSeqNP_444083.1. NC_000914.2.

3D structure databases

ProteinModelPortalQ53192.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01420.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91870; AAB91870; NGR_a01420.
GeneID962464.
KEGGrhi:NGR_a01420.
PATRIC32300985. VBIRhiSp122450_0128.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1173.
HOGENOMHOG000171368.
KOK02034.
OMAISITIAM.
OrthoDBEOG6T7N3V.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6193-MONOMER.

Family and domain databases

Gene3D1.10.3720.10. 1 hit.
InterProIPR000515. MetI-like.
[Graphical view]
PfamPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMSSF161098. SSF161098. 1 hit.
PROSITEPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4TQ_RHISN
AccessionPrimary (citable) accession number: Q53192
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: March 19, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names