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Protein

Probable peptide ABC transporter permease protein y4tQ

Gene

NGR_a01420

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Probable peptide ABC transporter permease protein y4tQ
Gene namesi
Ordered Locus Names:NGR_a01420
ORF Names:y4tQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei28 – 48HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei92 – 112HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei137 – 157HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei213 – 233HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei249 – 269HelicalPROSITE-ProRule annotationAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000603001 – 291Probable peptide ABC transporter permease protein y4tQAdd BLAST291

Structurei

3D structure databases

ProteinModelPortaliQ53192.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini88 – 276ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST189

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000171368.
KOiK02034.
OMAiGVPSWGR.
OrthoDBiPOG091H0048.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53192-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTTSRASG SPRIQTHTVV RIAKRHPLVL LGGGILLLLI LLALAAPLYS
60 70 80 90 100
GDPLVMDPFK RLQQPSASMW FGTDNLGRDV FARTIYGARI SLIVGLLSAV
110 120 130 140 150
CAAVCGLLIG VIAGYSRTFD NIIMRVMDGL MSIPTFLLAI ALLSLTGPGI
160 170 180 190 200
GILIVAIAIP ETPAVTRLVR SVVLSVRSRP YVEAALCGGA RLPRVLWRHI
210 220 230 240 250
LPSTIPPLMV QSATVCASAI MTEAGLSFIG VGVPSEIPSW GNMIANSRLF
260 270 280 290
LAIAPLTIFA PGLCLAVTVL AVNLLGDGLR DMFDPRSKRR R
Length:291
Mass (Da):30,910
Last modified:November 1, 1996 - v1
Checksum:iCD82B7EBB91146E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92399.1.
U00090 Genomic DNA. Translation: AAB91870.1.
RefSeqiNP_444083.1. NC_000914.2.
WP_010875180.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91870; AAB91870; NGR_a01420.
GeneIDi962464.
KEGGirhi:NGR_a01420.
PATRICi32300985. VBIRhiSp122450_0128.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92399.1.
U00090 Genomic DNA. Translation: AAB91870.1.
RefSeqiNP_444083.1. NC_000914.2.
WP_010875180.1. NC_000914.2.

3D structure databases

ProteinModelPortaliQ53192.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91870; AAB91870; NGR_a01420.
GeneIDi962464.
KEGGirhi:NGR_a01420.
PATRICi32300985. VBIRhiSp122450_0128.

Phylogenomic databases

HOGENOMiHOG000171368.
KOiK02034.
OMAiGVPSWGR.
OrthoDBiPOG091H0048.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4TQ_SINFN
AccessioniPrimary (citable) accession number: Q53192
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.