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Q53192

- Y4TQ_RHISN

UniProt

Q53192 - Y4TQ_RHISN

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Protein

Probable peptide ABC transporter permease protein y4tQ

Gene

NGR_a01420

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

  1. amino acid transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Transport

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6193-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable peptide ABC transporter permease protein y4tQ
Gene namesi
Ordered Locus Names:NGR_a01420
ORF Names:y4tQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

Cell inner membrane Curated; Multi-pass membrane protein PROSITE-ProRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei28 – 4821HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei92 – 11221HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei137 – 15721HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei213 – 23321HelicalPROSITE-ProRule annotationAdd
BLAST
Transmembranei249 – 26921HelicalPROSITE-ProRule annotationAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 291291Probable peptide ABC transporter permease protein y4tQPRO_0000060300Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01420.

Structurei

3D structure databases

ProteinModelPortaliQ53192.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini88 – 276189ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG1173.
HOGENOMiHOG000171368.
KOiK02034.
OMAiRVETTIM.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q53192-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALTTSRASG SPRIQTHTVV RIAKRHPLVL LGGGILLLLI LLALAAPLYS
60 70 80 90 100
GDPLVMDPFK RLQQPSASMW FGTDNLGRDV FARTIYGARI SLIVGLLSAV
110 120 130 140 150
CAAVCGLLIG VIAGYSRTFD NIIMRVMDGL MSIPTFLLAI ALLSLTGPGI
160 170 180 190 200
GILIVAIAIP ETPAVTRLVR SVVLSVRSRP YVEAALCGGA RLPRVLWRHI
210 220 230 240 250
LPSTIPPLMV QSATVCASAI MTEAGLSFIG VGVPSEIPSW GNMIANSRLF
260 270 280 290
LAIAPLTIFA PGLCLAVTVL AVNLLGDGLR DMFDPRSKRR R
Length:291
Mass (Da):30,910
Last modified:November 1, 1996 - v1
Checksum:iCD82B7EBB91146E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92399.1.
U00090 Genomic DNA. Translation: AAB91870.1.
RefSeqiNP_444083.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91870; AAB91870; NGR_a01420.
GeneIDi962464.
KEGGirhi:NGR_a01420.
PATRICi32300985. VBIRhiSp122450_0128.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. Translation: CAA92399.1 .
U00090 Genomic DNA. Translation: AAB91870.1 .
RefSeqi NP_444083.1. NC_000914.2.

3D structure databases

ProteinModelPortali Q53192.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01420.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91870 ; AAB91870 ; NGR_a01420 .
GeneIDi 962464.
KEGGi rhi:NGR_a01420.
PATRICi 32300985. VBIRhiSp122450_0128.

Phylogenomic databases

eggNOGi COG1173.
HOGENOMi HOG000171368.
KOi K02034.
OMAi RVETTIM.
OrthoDBi EOG6T7N3V.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6193-MONOMER.

Family and domain databases

Gene3Di 1.10.3720.10. 1 hit.
InterProi IPR000515. MetI-like.
[Graphical view ]
Pfami PF00528. BPD_transp_1. 1 hit.
[Graphical view ]
SUPFAMi SSF161098. SSF161098. 1 hit.
PROSITEi PS50928. ABC_TM1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4TQ_RHISN
AccessioniPrimary (citable) accession number: Q53192
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: October 29, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3