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Protein
Submitted name:

NodD3

Gene

nodD3

Organism
Rhizobium sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
NodD3Imported
Gene namesi
Name:nodD3Imported
OrganismiRhizobium sp.Imported
Taxonomic identifieri391 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Structurei

3D structure databases

ProteinModelPortaliQ53055.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-type DNA-bindingInterPro annotationAdd BLAST58

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q53055-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RNVTAAARSI NLSQPAMSAA VARLRSYFRD
60 70 80 90 100
DLFTMAGREF IPTPRAQGLA AAAREALQHI QLSILSWEPF NPARSDRRFR
110 120 130 140 150
IILSDYVTLV FFERVVERAT REAPAVSFEF RPPSDDNEDL LQRGDVDLLI
160 170 180 190 200
LPEIFMSNAH SRTKLFDDVH VCVGCRSNKQ LSEPLTFERY MSMGARCRWV
210 220 230 240 250
RDTLRLGLEE RYLLEYGQKR RIDVVVHGYS MIPTMLSDTD RIGTMPLRLA
260 270 280 290 300
QHFAQILPLQ IVELPLPQHL PFTEAVQWPA LHDSDPASRC VREMLVEEGS
310 320
RLASPLAASE FLINRDQHEY CPAHL
Length:325
Mass (Da):37,134
Last modified:November 1, 1996 - v1
Checksum:iB26C5671A7199017
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U11929 Genomic DNA. Translation: AAA68516.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U11929 Genomic DNA. Translation: AAA68516.1.

3D structure databases

ProteinModelPortaliQ53055.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ53055_RHISP
AccessioniPrimary (citable) accession number: Q53055
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 10, 2017
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.