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Protein

Chitooligosaccharide deacetylase

Gene

nodB

Organism
Rhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei28 – 281Proton acceptorBy similarity
Metal bindingi79 – 791Divalent metal cation; via tele nitrogenBy similarity
Metal bindingi83 – 831Divalent metal cation; via tele nitrogenBy similarity
Sitei148 – 1481Raises pKa of active site HisBy similarity
Active sitei174 – 1741Proton donorBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Nodulation

Keywords - Ligandi

Metal-binding

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-4870-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Chitooligosaccharide deacetylase (EC:3.5.1.-)
Alternative name(s):
Nodulation protein B
Gene namesi
Name:nodB
Ordered Locus Names:mlr6175
OrganismiRhizobium loti (strain MAFF303099) (Mesorhizobium loti)
Taxonomic identifieri266835 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
Proteomesi
  • UP000000552 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 219219Chitooligosaccharide deacetylasePRO_0000172751Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi266835.mlr6175.

Structurei

3D structure databases

ProteinModelPortaliQ52845.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini21 – 213193NodB homologyPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the polysaccharide deacetylase family.Curated
Contains 1 NodB homology domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108ZJ4. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000260719.
KOiK14659.
OMAiASHGMRP.
OrthoDBiEOG6V1M8Q.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR026402. Nodulat_NodB.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
TIGRFAMsiTIGR04243. nodulat_NodB. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q52845-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRLDDRWKV QSECADGTGR RSVYLTFDDG PNPCFTPQIL DVLAQNRVPA
60 70 80 90 100
TFFVIGAYAA EHPELIQRMI AEGHEVGNHT MSHPDLSKCG LGEVQREVFE
110 120 130 140 150
ANQAIMLACP QASIRYIRAP YGAWSEEVFT ASEIAGLAAL HWSIDPRDWS
160 170 180 190 200
RPGTDAIVDA VLASVRPGAI VLLHDGCPPD ESTRSTQASL RNQTVMALSN
210
LIPALDACGY EIRSLPEHH
Length:219
Mass (Da):24,091
Last modified:June 1, 2001 - v2
Checksum:i6A6E5AAC8B506C26
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti9 – 102KV → EA in CAA46575 (PubMed:8850088).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA. Translation: BAB52508.1.
X65620 Genomic DNA. Translation: CAA46575.1.
PIRiS21412.
RefSeqiWP_010913829.1. NC_002678.2.

Genome annotation databases

EnsemblBacteriaiBAB52508; BAB52508; BAB52508.
GeneIDi1229377.
KEGGimlo:mlr6175.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000012 Genomic DNA. Translation: BAB52508.1.
X65620 Genomic DNA. Translation: CAA46575.1.
PIRiS21412.
RefSeqiWP_010913829.1. NC_002678.2.

3D structure databases

ProteinModelPortaliQ52845.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi266835.mlr6175.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB52508; BAB52508; BAB52508.
GeneIDi1229377.
KEGGimlo:mlr6175.

Phylogenomic databases

eggNOGiENOG4108ZJ4. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000260719.
KOiK14659.
OMAiASHGMRP.
OrthoDBiEOG6V1M8Q.

Enzyme and pathway databases

BioCyciMLOT266835:GJ9L-4870-MONOMER.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
IPR026402. Nodulat_NodB.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
TIGRFAMsiTIGR04243. nodulat_NodB. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MAFF303099.
  2. "Novel and complex chromosomal arrangement of Rhizobium loti nodulation genes."
    Scott D.B., Young C.A., Collins-Emerson J.M., Terzaghi E.A., Rockman E.S., Lewis P.E., Pankhurst C.E.
    Mol. Plant Microbe Interact. 9:187-197(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-52.
    Strain: NZP 2213.

Entry informationi

Entry nameiNODB_RHILO
AccessioniPrimary (citable) accession number: Q52845
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: June 1, 2001
Last modified: November 11, 2015
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.