Q52845 (NODB_RHILO) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Chitooligosaccharide deacetylase
EC=3.5.1.-

Alternative name(s):
Nodulation protein B

Gene names

Name:	nodB
Ordered Locus Names:	mlr6175

Organism

Rhizobium loti (strain MAFF303099) (Mesorhizobium loti) [Complete proteome] [HAMAP]

Taxonomic identifier

266835 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Mesorhizobium

Protein attributes

Sequence length	219 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts.
Subcellular location	Cytoplasm.
Sequence similarities	Belongs to the polysaccharide deacetylase family.

Ontologies

Keywords
Biological process	Nodulation
Cellular component	Cytoplasm
Molecular function	Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro nodulation Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 219	219	Chitooligosaccharide deacetylase		PRO_0000172751
Experimental info
	Sequence conflict	9 – 10	2	KV → EA in CAA46575. Ref.2

Sequences

	Sequence		Length	Mass (Da)
	Q52845 [UniParc]. Last modified June 1, 2001. Version 2. Checksum: 6A6E5AAC8B506C26	FASTA	219	24,091
	10 20 30 40 50 60 MRRLDDRWKV QSECADGTGR RSVYLTFDDG PNPCFTPQIL DVLAQNRVPA TFFVIGAYAA 70 80 90 100 110 120 EHPELIQRMI AEGHEVGNHT MSHPDLSKCG LGEVQREVFE ANQAIMLACP QASIRYIRAP 130 140 150 160 170 180 YGAWSEEVFT ASEIAGLAAL HWSIDPRDWS RPGTDAIVDA VLASVRPGAI VLLHDGCPPD 190 200 210 ESTRSTQASL RNQTVMALSN LIPALDACGY EIRSLPEHH

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti." Kaneko T., Nakamura Y., Sato S., Asamizu E., Kato T., Sasamoto S., Watanabe A., Idesawa K., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Mochizuki Y., Nakayama S. , Nakazaki N., Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S. DNA Res. 7:331-338(2000) [PubMed: 11214968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: MAFF303099.
[2]	"Novel and complex chromosomal arrangement of Rhizobium loti nodulation genes." Scott D.B., Young C.A., Collins-Emerson J.M., Terzaghi E.A., Rockman E.S., Lewis P.E., Pankhurst C.E. Mol. Plant Microbe Interact. 9:187-197(1996) [PubMed: 8850088] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-52. Strain: NZP 2213.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000012 Genomic DNA. Translation: BAB52508.1. X65620 Genomic DNA. Translation: CAA46575.1.
PIR	S21412.
RefSeq	NP_106722.1. NC_002678.2.
3D structure databases
ProteinModelPortal	Q52845.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1229377.
GenomeReviews	Gene locus mlr6175 in contig BA000012_GR.
KEGG	mlo:mlr6175.
NMPDR	fig|266835.1.peg.4823.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG751163.
OMA	SHHPSMA.
ProtClustDB	CLSK864446.
Family and domain databases
InterPro	IPR011330. Glyco_hydro/deAcase_b/a-brl. IPR002509. Polysac_deacetylase. [Graphical view]
Gene3D	G3DSA:3.20.20.370. Polysac_deacetylase. 1 hit.
KO	K14659.
Pfam	PF01522. Polysacc_deac_1. 1 hit. [Graphical view]
SUPFAM	SSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

NODB_RHILO

Accession

Primary (citable) accession number: Q52845

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	June 1, 2001
Last modified:	November 16, 2011
This is version 59 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program