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Protein
Submitted name:

Nodulation protein D

Gene

nodD

Organism
Rhizobium fredii (Sinorhizobium fredii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Nodulation protein DImported
Gene namesi
Name:nodDImported
OrganismiRhizobium fredii (Sinorhizobium fredii)Imported
Taxonomic identifieri380 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Structurei

3D structure databases

ProteinModelPortaliQ52752.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-type DNA-bindingInterPro annotationAdd BLAST58

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q52752-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALMTK RSVTAAARSI NLSQPAMSAA IARLRTYFGD
60 70 80 90 100
DLFTMRGREL IPTPRAIALA PAVRDALLHI QFSIISWDMF NPVQSQRRFR
110 120 130 140 150
IRLSDVIMLV FFERVVKRLA REAPGIGFEL LPLTEDPDEL LRYGDVDFVI
160 170 180 190 200
LPELFASSDH PKAKLLDDTL VCVGCPTNKQ LKRQLSFENY GSMGHIAAKF
210 220 230 240 250
GRTLKPSIEN WLLLEHGLKR RIEVVVPGFS LIPPLLSGTD RIATMPLRLV
260 270 280 290 300
EHFAKTTPLR VAELPLALPP FAQAVQWPSL HNRDQASIWM RQVLLQEALH
310
MTTPRDSVEY RP
Length:312
Mass (Da):35,294
Last modified:November 1, 1996 - v1
Checksum:i07EC549EF665D0C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L38460 Genomic DNA. Translation: AAB38107.1.
PIRiB28663.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L38460 Genomic DNA. Translation: AAB38107.1.
PIRiB28663.

3D structure databases

ProteinModelPortaliQ52752.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ52752_RHIFR
AccessioniPrimary (citable) accession number: Q52752
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.