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Q52671 (SOXB_RHOCB) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Sarcosine oxidase subunit beta
Short name=Sarcosine oxidase subunit B
EC=1.5.3.1
Gene names
Name:soxB
Ordered Locus Names:RCAP_rcc02316
OrganismRhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [Complete proteome] [HAMAP]
Taxonomic identifier272942 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Rhodobacter

Protein attributes

Sequence length414 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate By similarity.

Catalytic activity

Sarcosine + H2O + O2 = glycine + formaldehyde + H2O2.

Cofactor

Binds 1 FMN covalently By similarity.

FAD By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the soxB family.

Ontologies

Keywords
   Cellular componentCytoplasm
   LigandFAD
FMN
Flavoprotein
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtetrahydrofolate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionsarcosine oxidase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 414414Sarcosine oxidase subunit beta
PRO_0000072046

Regions

Nucleotide binding34 – 6431FAD By similarity

Sequences

Sequence LengthMass (Da)Tools
Q52671 [UniParc].

Last modified June 28, 2011. Version 2.
Checksum: D7A5C411F9ABB411

FASTA41445,018
        10         20         30         40         50         60 
MRRYSIFAVA REALRYHSGW EKAWASPEPK KRYDVIVVGA GGHGLATAYY LGKVHGIKNV 

        70         80         90        100        110        120 
AIIEKGWLGG GNTGRNTTII RSNYLQDPSA AIYEKARSLY EGLSQDLNYN VMFSPRGLLM 

       130        140        150        160        170        180 
LAQSEHEMRG YKRTVYANNL QNVETRWIEP KEVKKLVPIL NIAGPRYPVL GALLQEKGGT 

       190        200        210        220        230        240 
ARHDAVAWGY ARACSDMGMD LLQNTEVTGV RTEGGRVVGV DTSRGSIDCG KLAIVVAGHS 

       250        260        270        280        290        300 
SVLAGMAGFR LPIESMALQA WVSEPIKPTI DVVVMANLVH GYMSQSDKGE LVIGGGTDGF 

       310        320        330        340        350        360 
NNYSQRGSWH HVEETTRALI ETFPVISRLK MLRQWGGIVD MTGDRSPILS KTPVDGIFVN 

       370        380        390        400        410 
CGWGTGGFKA IPGSGFAMAE LVAKGYSPLA AEFGLHRFKE GQFIDESVAA GVAH

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003."
Strnad H., Lapidus A., Paces J., Ulbrich P., Vlcek C., Paces V., Haselkorn R.
J. Bacteriol. 192:3545-3546(2010) [PubMed: 20418398] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-309 / NBRC 16581 / SB1003.
[2]"Rhodobacter capsulatus cycH: a bipartite gene that affects differentially the biogenesis of various c-type cytochromes."
Lang S.E., Jenney F.E. Jr., Daldal F.
Submitted (JAN-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-208.
Strain: MT1131.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001312 Genomic DNA. Translation: ADE86046.1.
U46071 Genomic DNA. Translation: AAB01814.1.
RefSeqYP_003578453.1. NC_014034.1.

3D structure databases

ProteinModelPortalQ52671.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID9005135.
KEGGrcp:RCAP_rcc02316.
PATRIC35504812. VBIRhoCap134200_2357.

Organism-specific databases

CMRSearch...

Family and domain databases

InterProIPR006076. FAD-dep_OxRdtase.
IPR006278. SoxB.
[Graphical view]
KOK00303.
PANTHERPTHR13847:SF106. PTHR13847:SF106. 1 hit.
PfamPF01266. DAO. 1 hit.
[Graphical view]
TIGRFAMsTIGR01373. SoxB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameSOXB_RHOCB
AccessionPrimary (citable) accession number: Q52671
Secondary accession number(s): D5ALI5
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: June 28, 2011
Last modified: January 25, 2012
This is version 54 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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