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Protein
Submitted name:

XynA

Gene

xynA

Organism
Ruminococcus albus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11A_RUMAL.

Names & Taxonomyi

Protein namesi
Submitted name:
XynAImported
Gene namesi
Name:xynAImported
OrganismiRuminococcus albusImported
Taxonomic identifieri1264 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminococcus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232Sequence analysisAdd
BLAST
Chaini33 – 680648Sequence analysisPRO_5004247998Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi697329.Rumal_0076.

Structurei

3D structure databases

ProteinModelPortaliQ52644.
SMRiQ52644. Positions 58-263.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini56 – 257202GH11 (glycosyl hydrolase family 11)InterPro annotationAdd
BLAST
Domaini474 – 657184NodB homologyInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4107T94. Bacteria.
ENOG410YH6C. LUCA.

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR003305. CenC_carb-bd.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR001137. Glyco_hydro_11.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF02018. CBM_4_9. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q52644-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNNFKMRVM AGVAAVICLA GVLGSCGNSS DKDSSSKKSA DSAKADSNKD
60 70 80 90 100
SKNGQVFTKN ARGTSDGYDY ELWKDKGDTE MTINEGGTFS CKWSNINNAL
110 120 130 140 150
FRRGKKFDCT KTYKELGNIS VKYGVDYQPD GNSYMCVYGW TIDPLVEFYI
160 170 180 190 200
VESWGSWRPP GAAESLGTVT VDGGTYDIYK TTRYEQPSID GTKTFDQYWS
210 220 230 240 250
VRQDKPTGDG TKIEGTISIS KHFDAWEQVG LTLGNMYEVA LNIEGYQSNG
260 270 280 290 300
QATIYENELT VDGNYSADPA PEVKKSSDEK EPEPQSTNGA GLFTADFESD
310 320 330 340 350
ECGWTSRGSA AVAQNTDEAS EGRGSLFVSG RTDNWNGASI ELDSGTFKQG
360 370 380 390 400
STYSFKTDAM QKSGKEATLK FTMQYTAADG DHYDQIAQQT APDGEWITLE
410 420 430 440 450
GDYTIPDDAT KLVLYVESPD SLTDFYIDNA SATGDGSEPA KTADDKKEEA
460 470 480 490 500
EYTFSDPVAV SNTADISWID KDKPMVAIAF DDGASAAKKG DPAYRIIDTM
510 520 530 540 550
ADNGFHATFF YIGSQIKTEE QVKYAHEKGM ETANHTMTHP YLSKLKPAEI
560 570 580 590 600
RDEYEKCREK LKGIIGEEPS ALMRLPYLDG GGDTTRTLND VALISCSVDT
610 620 630 640 650
KDWNKATSDK IVDTIKKAKD NGSLNGAIVL CHENYAATAE AMEEIVPWLK
660 670 680
DEGWQVVTVS ELFAANGKEL MGGKIYSKLS
Length:680
Mass (Da):74,469
Last modified:November 1, 1996 - v1
Checksum:i8BEC0A50C5C928CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43089 Genomic DNA. Translation: AAA85198.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43089 Genomic DNA. Translation: AAA85198.1.

3D structure databases

ProteinModelPortaliQ52644.
SMRiQ52644. Positions 58-263.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi697329.Rumal_0076.

Protein family/group databases

CAZyiCBM22. Carbohydrate-Binding Module Family 22.
GH11. Glycoside Hydrolase Family 11.
mycoCLAPiXYN11A_RUMAL.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4107T94. Bacteria.
ENOG410YH6C. LUCA.

Family and domain databases

Gene3Di2.60.120.180. 1 hit.
2.60.120.260. 1 hit.
3.20.20.370. 1 hit.
InterProiIPR003305. CenC_carb-bd.
IPR013320. ConA-like_dom.
IPR008979. Galactose-bd-like.
IPR013319. GH11/12.
IPR018208. GH11_AS_1.
IPR033119. GH11_AS_2.
IPR033123. GH11_dom.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR001137. Glyco_hydro_11.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF02018. CBM_4_9. 1 hit.
PF00457. Glyco_hydro_11. 1 hit.
PF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
PRINTSiPR00911. GLHYDRLASE11.
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF88713. SSF88713. 1 hit.
PROSITEiPS00776. GH11_1. 1 hit.
PS00777. GH11_2. 1 hit.
PS51761. GH11_3. 1 hit.
PS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular cloning, nucleotide sequence and characteristics of a xylanase gene (xynA) from Ruminococcus albus 7."
    Nakamura M., Nagamine T., Takenaka A., Aminov R.I., Ogata K., Tajima K., Matsui H., Benno Y., Itabashi H.
    Anim. Sci. J. 73:347-352(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 7Imported.

Entry informationi

Entry nameiQ52644_RUMAL
AccessioniPrimary (citable) accession number: Q52644
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.