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Protein

Alpha-amylase

Gene

amy2

Organism
Pseudomonas sp. KFCC10818
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Name:amy2Imported
OrganismiPseudomonas sp. KFCC10818Imported
Taxonomic identifieri90078 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 563538Alpha-amylaseSequence analysisPRO_5004248447Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ52413.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini31 – 363333AamyInterPro annotationAdd
BLAST
Domaini373 – 46189Aamy_CInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR031965. CBM26.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF16738. CBM26. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q52413-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFNKSLSAG LMLFGSLIGG TQSYAQTVPK TTFVHLFEWS WQDIAQECEE
60 70 80 90 100
FLGPKGFAAV QVSPPQKSVD NPAWWSRYQP VSYAFEGRSG NRAQFADMVQ
110 120 130 140 150
RCKNVGVDIY VDAVINHMAA WNRNFPEVPY GVNDFNSCTS DINYSNRWSV
160 170 180 190 200
QNCDLVGLND LKTSSEYVRQ KIADYMNDAI SMGVAGFRID AAKHMPAEDI
210 220 230 240 250
AAIKSKLHGT PYIFQEVIGA ENEPVKPAEY TYIGDVTEFF FARTLGPKFK
260 270 280 290 300
HGGIKDLQGI GSWNGWLSSS DAVTFVTNHD EERHNPGQVL SHQDFGNLYF
310 320 330 340 350
LGNVFTLAYP YGYPKVMSGY YFNDFDAGPP ATGIHTGNAC GFDGGDWVCE
360 370 380 390 400
HRWRGVANMV AFRNHTAAEW RVTNWWDDGY NQVAFGRGGL GFVVINRDDN
410 420 430 440 450
KGINQGFATG MPAGEYCDII SGDFNSQTGT CSGTTISVDS SGYAHFTVAS
460 470 480 490 500
HNAAAIHVGA KVGQTCTDCD DGEKKPATPV TATNLCYDNA ANHTSPTLHY
510 520 530 540 550
WGAQPAGSLT NATWPGVTMT ANGDFYCHDV ETELSSVNVI FSNQGANKSN
560
DLTTTTGTCY SDG
Length:563
Mass (Da):61,580
Last modified:November 1, 1996 - v1
Checksum:i06DDA756C91A9252
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U40056 Genomic DNA. Translation: AAA86835.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U40056 Genomic DNA. Translation: AAA86835.1.

3D structure databases

ProteinModelPortaliQ52413.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase/branching_C.
IPR031319. A-amylase_C.
IPR006046. Alpha_amylase.
IPR031965. CBM26.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF16738. CBM26. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00632. Aamy_C. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Cloning, sequencing, and expression of amylase isozyme gene from Pseudomonas sp. KFCC-10818."
    Kim E.S., Na H.-K., Jhon D.-Y., Yoo O.J., Chun S.-B., Wui I.-S.
    Submitted (NOV-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: KFCC 10818Imported.

Entry informationi

Entry nameiQ52413_9PSED
AccessioniPrimary (citable) accession number: Q52413
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.