Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative MerR protein

Gene

merR

Organism
Pseudomonas putida (Arthrobacter siderocapsulatus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative MerR proteinImported
Gene namesi
Name:merRImported
Encoded oniPlasmid pWW0Imported
OrganismiPseudomonas putida (Arthrobacter siderocapsulatus)Imported
Taxonomic identifieri303 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Interactioni

Protein-protein interaction databases

STRINGi390235.PputW619_2323.

Structurei

3D structure databases

ProteinModelPortaliQ52395.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 7670HTH merR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH merR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105W1Y. Bacteria.
COG0789. LUCA.
KOiK08365.

Family and domain databases

InterProiIPR009061. DNA-bd_dom_put.
IPR011794. MerR.
IPR000551. MerR-type_HTH_dom.
IPR015358. Tscrpt_reg_MerR_DNA-bd.
[Graphical view]
PfamiPF00376. MerR. 1 hit.
PF09278. MerR-DNA-bind. 1 hit.
[Graphical view]
PRINTSiPR00040. HTHMERR.
SMARTiSM00422. HTH_MERR. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
TIGRFAMsiTIGR02051. MerR. 1 hit.
PROSITEiPS00552. HTH_MERR_1. 1 hit.
PS50937. HTH_MERR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q52395-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLPEPEKPY GGIRRYGDAD
60 70 80 90 100
VARVRFVKSA QRLGFSLDEI AELLRLEDGT HCEEASSLAE HKLKDVREKM
110 120 130 140
ADLARMEAVL SDLVCACHAR KGNVSCPLIA SLQGKKEPRS ADAV
Length:144
Mass (Da):15,884
Last modified:November 1, 1996 - v1
Checksum:iF5760BEC88602FC7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ344068 Genomic DNA. Translation: CAC86844.1.
RefSeqiNP_542904.1. NC_003350.1.
WP_011005943.1. NC_003350.1.

Genome annotation databases

GeneIDi1218767.
KEGGipg:1218767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ344068 Genomic DNA. Translation: CAC86844.1.
RefSeqiNP_542904.1. NC_003350.1.
WP_011005943.1. NC_003350.1.

3D structure databases

ProteinModelPortaliQ52395.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi390235.PputW619_2323.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1218767.
KEGGipg:1218767.

Phylogenomic databases

eggNOGiENOG4105W1Y. Bacteria.
COG0789. LUCA.
KOiK08365.

Family and domain databases

InterProiIPR009061. DNA-bd_dom_put.
IPR011794. MerR.
IPR000551. MerR-type_HTH_dom.
IPR015358. Tscrpt_reg_MerR_DNA-bd.
[Graphical view]
PfamiPF00376. MerR. 1 hit.
PF09278. MerR-DNA-bind. 1 hit.
[Graphical view]
PRINTSiPR00040. HTHMERR.
SMARTiSM00422. HTH_MERR. 1 hit.
[Graphical view]
SUPFAMiSSF46955. SSF46955. 1 hit.
TIGRFAMsiTIGR02051. MerR. 1 hit.
PROSITEiPS00552. HTH_MERR_1. 1 hit.
PS50937. HTH_MERR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ52395_PSEPU
AccessioniPrimary (citable) accession number: Q52395
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 16, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.