Esterase D - Cellvibrio japonicus

Preferred order of sections

Names and origin

Protein names

Submitted name:
Esterase D EMBL CAA41727.1

Gene names

Name:

xynD EMBL CAA41727.1

Organism

Cellvibrio japonicus EMBL CAA41727.1

Taxonomic identifier

155077 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Cellvibrio

Protein attributes

Sequence length	583 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Calcium PDB 2W46 PDB 2W87 Metal-binding PDB 2W46 PDB 2W87
Technical term	3D-structure PDB 2W46 PDB 2W87
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW polysaccharide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

164

1

Calcium 1 PDB 2W46 PDB 2W87

Metal binding

165

1

Calcium 1 PDB 2W46 PDB 2W87

Metal binding

185

1

Calcium 1; via carbonyl oxygen PDB 2W46 PDB 2W87

Metal binding

188

1

Calcium 1; via carbonyl oxygen PDB 2W46 PDB 2W87

Metal binding

191

1

Calcium 2 PDB 2W87

Metal binding

192

1

Calcium 2; via carbonyl oxygen PDB 2W87

Metal binding

194

1

Calcium 2 PDB 2W87

Metal binding

283

1

Calcium 1 PDB 2W46 PDB 2W87

Sequences

Sequence

Length

Mass (Da)

Tools

Q51815 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: CDB3CDDDBCA6A211
Show »

FASTA

583

60,582

        10         20         30         40         50         60 
MNNGKYPLNS LMKILKYGSM GAGLALIALS HTQRPPACTY TIDSEWSTGF TANITLKNDT 

        70         80         90        100        110        120 
GAAINNWNVN WQYSSNRMTS GWNANFSGTN PYNATNMSWN GSIAPGQSIS FGLQGEKNGS 

       130        140        150        160        170        180 
TAERPTVTGA ACNSATTSSV ASSSSTPTTS SSSASSVASA LLLQEAQAGF CRVDGTIDNN 

       190        200        210        220        230        240 
HTGFTGSGFA NTNNAQGAAV VWAIDATSSG RRTLTIRYAN GGTANRNGSL VINGGSNGNY 

       250        260        270        280        290        300 
TVSLPTTGAW TTWQTATIDV DLVQGNNIVQ LSATTAEGLP NIDSLSVVGG TVRAGNCGSV 

       310        320        330        340        350        360 
SSSSSVQSSS SSNSSAGAAV PSAGLGKPRT LQNGTVNIQS GGTQRSYILD APGNYNNNKP 

       370        380        390        400        410        420 
YRLVIGYHWR GGTAQDVHTG QTVQRDAWAH YGMKKLAGDS TIFVAPQGIG NGWGNGGGAD 

       430        440        450        460        470        480 
VTFTDNILAQ LKTELCIDES RVFANGFSFG GGMSYAIACA RANVFKAVAV YSAGVISGCS 

       490        500        510        520        530        540 
GANSPIAYFG AHGLGDSVLG ISGGRSMRDR FVRNNACTAM TPPEPSVGSR LHTCTSYVCP 

       550        560        570        580 
NRQYPVRWCA FDGGHDASPL DNGVGQKGYT WLADEAWKFF TQF

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References

[1]	"A modular esterase from Pseudomonas fluorescens subsp. cellulosa contains a non-catalytic cellulose-binding domain." Ferreira L.M., Wood T.M., Williamson G., Faulds C., Hazlewood G.P., Black G.W., Gilbert H.J. Biochem. J. 294:349-355(1993) [PubMed: 8373350] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Evidence that family 35 carbohydrate binding modules display conserved specificity but divergent function." Montanier C., van Bueren A.L., Dumon C., Flint J.E., Correia M.A., Prates J.A., Firbank S.J., Lewis R.J., Grondin G.G., Ghinet M.G., Gloster T.M., Herve C., Knox J.P., Talbot B.G., Turkenburg J.P., Kerovuo J., Brzezinski R., Fontes C.M. , Davies G.J., Boraston A.B., Gilbert H.J. Proc. Natl. Acad. Sci. U.S.A. 106:3065-3070(2009) [PubMed: 19218457] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 160-298 IN COMPLEX WITH CALCIUM.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X58956 Genomic DNA. Translation: CAA41727.1.

PIR

S36781.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2W46	X-ray	1.90	A/B	155-298	[»]
2W87	X-ray	1.60	A/B	160-298	[»]

ProteinModelPortal

Q51815.

ModBase

Search...

Protein family/group databases

CAZy

CBM2. Carbohydrate-Binding Module Family 2.
CBM35. Carbohydrate-Binding Module Family 35.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR008965. Carb-bd_dom.
IPR012291. CBD_carb-bd_dom.
IPR018366. CBM2_CS.
IPR001919. Cellulose-bd_dom_fam2_bac.
IPR005084. CMB_fam6.
IPR008979. Galactose-bd-like.
[Graphical view]

Gene3D

G3DSA:2.60.40.290. CBD_carb_bd. 1 hit.

Pfam

PF00553. CBM_2. 1 hit.
PF03422. CBM_6. 1 hit.
[Graphical view]

SMART

SM00637. CBD_II. 1 hit.
[Graphical view]

SUPFAM

SSF49384. Cellul_bind. 1 hit.
SSF49785. Gal_bind_like. 1 hit.

PROSITE

PS51173. CBM2. 1 hit.
PS00561. CBM2_A. 1 hit.
PS51175. CBM6. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q51815_9GAMM

Accession

Primary (citable) accession number: Q51815

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)