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Protein
Submitted name:

Subunit delta of sarcosine oxidase

Gene

soxD

Organism
Corynebacterium sp. U-96
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi6ZincCombined sources1
Metal bindingi9ZincCombined sources1
Metal bindingi59Zinc; via pros nitrogenCombined sources1
Metal bindingi63ZincCombined sources1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Subunit delta of sarcosine oxidaseImported
Gene namesi
Name:soxDImported
OrganismiCorynebacterium sp. U-96Imported
Taxonomic identifieri31944 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesCorynebacteriaceaeCorynebacterium

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi6 ↔ 63Combined sources
Disulfide bondi9 ↔ 63Combined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VRQX-ray2.20D1-99[»]
1X31X-ray2.15D1-99[»]
3AD7X-ray2.20D1-99[»]
3AD8X-ray2.20D1-99[»]
3AD9X-ray2.30D1-99[»]
3ADAX-ray2.20D1-99[»]
ProteinModelPortaliQ50LF1.
SMRiQ50LF1.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ50LF1.

Family & Domainsi

Family and domain databases

InterProiIPR006279. SoxD.
[Graphical view]
PfamiPF04267. SoxD. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01374. soxD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q50LF1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMLIECPNCG PRNENEFKYG GEAHVAYPED PNALSDKEWS RYLFYRGNKK
60 70 80 90
GIFAERWVHS GGCRKWFNAL RDTVSYEFKA VYRAGEARPQ LDSTEGGTR
Length:99
Mass (Da):11,429
Last modified:June 7, 2005 - v1
Checksum:i7E0EAA86C1CE66C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB186138 Genomic DNA. Translation: BAD97817.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB186138 Genomic DNA. Translation: BAD97817.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VRQX-ray2.20D1-99[»]
1X31X-ray2.15D1-99[»]
3AD7X-ray2.20D1-99[»]
3AD8X-ray2.20D1-99[»]
3AD9X-ray2.30D1-99[»]
3ADAX-ray2.20D1-99[»]
ProteinModelPortaliQ50LF1.
SMRiQ50LF1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ50LF1.

Family and domain databases

InterProiIPR006279. SoxD.
[Graphical view]
PfamiPF04267. SoxD. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01374. soxD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ50LF1_9CORY
AccessioniPrimary (citable) accession number: Q50LF1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 7, 2005
Last sequence update: June 7, 2005
Last modified: November 2, 2016
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.