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Q503Z4 (Q503Z4_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length429 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processganglioside metabolic process

Inferred from direct assay Ref.2. Source: ZFIN

   Cellular_componentendoplasmic reticulum

Inferred from direct assay Ref.2. Source: ZFIN

   Molecular_functionexo-alpha-sialidase activity

Inferred from direct assay Ref.2. Source: ZFIN

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q503Z4 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: B32252C2305F2317

FASTA42948,517
        10         20         30         40         50         60 
MGSQYYPARS ILFQKEPSGV TYRVPALIYI PRSSCFLAFC EERLTPADAQ AHLLVMRKGT 

        70         80         90        100        110        120 
FYKNYVEWKD MEVLSTARLE GYRSMNPCPV YDEFTDTIFL FFIAVLGHTS ESYQLITGKN 

       130        140        150        160        170        180 
VTRLCYVSSC DQGDTWSNAT DLTRTLIGDT IKEWATFAVG PGHGTQLKSG RLIIPAYAYH 

       190        200        210        220        230        240 
IDCRNCFGKT CKTSPHSFCF YSDTHGNVWH FGQALSEPNS VECQMVSVDE EDGVNLLYCN 

       250        260        270        280        290        300 
ARSISGYRVQ AVSFDHGTFF QDGQLVHKLL EPRNGCHGSV IGFPAPIFQL ERFKSIYNSL 

       310        320        330        340        350        360 
ELSAAPRSPK NFLPPTWVVY SHPTCPNSRR DLGVYLSLLP RDPDSWSGPW IIYDGPSAYS 

       370        380        390        400        410        420 
DLAYVDLMSS DAAGVTVFAC LFESGTKTAY DEISFCIFTL YELIDHLPQD QEKTTLLKRK 


RIWERCFIC 

« Hide

References

« Hide 'large scale' references
[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Eye EMBL AAH95117.1.
[2]"Molecular cloning and biochemical characterization of sialidases from zebrafish (Danio rerio)."
Manzoni M., Colombi P., Papini N., Rubaga L., Tiso N., Preti A., Venerando B., Tettamanti G., Bresciani R., Argenton F., Borsani G., Monti E.
Biochem. J. 408:395-406(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: PCR rescue EMBL AAI65570.1.
[4]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000074848.
[5]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000074848.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU694447 Genomic DNA. No translation available.
BC095117 mRNA. Translation: AAH95117.1.
BC165570 mRNA. Translation: AAI65570.1.
EF116275 mRNA. Translation: ABO45315.1.
RefSeqNP_001018384.1. NM_001020548.2.
XP_005169770.1. XM_005169713.1.
UniGeneDr.89238.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000074848.

Protein family/group databases

CAZyGH33. Glycoside Hydrolase Family 33.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000080398; ENSDARP00000074848; ENSDARG00000057677.
GeneID553569.
KEGGdre:553569.

Organism-specific databases

CTD129807.
ZFINZDB-GENE-050522-125. neu4.

Phylogenomic databases

eggNOGNOG84455.
GeneTreeENSGT00390000011171.
HOGENOMHOG000233778.
HOVERGENHBG052608.
InParanoidQ503Z4.
KOK12357.
OMAMNPCPVL.
OrthoDBEOG7MSMNP.
TreeFamTF331063.

Family and domain databases

Gene3D2.120.10.10. 1 hit.
InterProIPR026946. Sialidase-4.
IPR026856. Sialidase_fam.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PTHR10628:SF8. PTHR10628:SF8. 1 hit.
SUPFAMSSF50939. SSF50939. 1 hit.
ProtoNetSearch...

Other

NextBio20880308.
PROQ503Z4.

Entry information

Entry nameQ503Z4_DANRE
AccessionPrimary (citable) accession number: Q503Z4
Entry history
Integrated into UniProtKB/TrEMBL: June 7, 2005
Last sequence update: June 7, 2005
Last modified: February 19, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)