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Q50303

- RL6_MYCPN

UniProt

Q50303 - RL6_MYCPN

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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Mycoplasma pneumoniae (strain ATCC 29342 / M129)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciMPNE272634:GJ6Z-187-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:MPN_180
ORF Names:MP651
OrganismiMycoplasma pneumoniae (strain ATCC 29342 / M129)
Taxonomic identifieri272634 [NCBI]
Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
ProteomesiUP000000808: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18418450S ribosomal protein L6PRO_0000131061Add
BLAST

Proteomic databases

PaxDbiQ50303.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

IntActiQ50303. 1 interaction.
STRINGi272634.MPN180.

Structurei

3D structure databases

ProteinModelPortaliQ50303.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0097.
KOiK02933.
OMAiAPKQTEI.
OrthoDBiEOG67DPRD.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q50303-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKIGNRTIT LDPAKVNLNF QKDHIAVKGP LGQIELKLPP NLPLKFELKD
60 70 80 90 100
NNLQITRNNE LKQSKIFHGT YNALITNAII GVTQGFEKKL RLVGVGYRAN
110 120 130 140 150
VEGETLNLQL GYSHPIKEKI PKGLTVKVEK NTEITISGIS KELVGQFATE
160 170 180
VRKWRKPEPY KGKGVLYFDE VIVRKAGKTA EGKK
Length:184
Mass (Da):20,589
Last modified:November 1, 1997 - v1
Checksum:iC92DC101E99C2651
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U34795 Genomic DNA. Translation: AAC43701.1.
U00089 Genomic DNA. Translation: AAB96299.1.
PIRiS62827.
RefSeqiNP_109868.1. NC_000912.1.
WP_010874537.1. NC_000912.1.

Genome annotation databases

EnsemblBacteriaiAAB96299; AAB96299; MPN_180.
GeneIDi876780.
KEGGimpn:MPN180.
PATRICi20021683. VBIMycPne110_0198.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U34795 Genomic DNA. Translation: AAC43701.1 .
U00089 Genomic DNA. Translation: AAB96299.1 .
PIRi S62827.
RefSeqi NP_109868.1. NC_000912.1.
WP_010874537.1. NC_000912.1.

3D structure databases

ProteinModelPortali Q50303.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi Q50303. 1 interaction.
STRINGi 272634.MPN180.

Proteomic databases

PaxDbi Q50303.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB96299 ; AAB96299 ; MPN_180 .
GeneIDi 876780.
KEGGi mpn:MPN180.
PATRICi 20021683. VBIMycPne110_0198.

Phylogenomic databases

eggNOGi COG0097.
KOi K02933.
OMAi APKQTEI.
OrthoDBi EOG67DPRD.

Enzyme and pathway databases

BioCyci MPNE272634:GJ6Z-187-MONOMER.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
HAMAPi MF_01365_B. Ribosomal_L6_B.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
PRINTSi PR00059. RIBOSOMALL6.
SUPFAMi SSF56053. SSF56053. 2 hits.
TIGRFAMsi TIGR03654. L6_bact. 1 hit.
PROSITEi PS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of 56 kb from the genome of the bacterium Mycoplasma pneumoniae comprising the dnaA region, the atp operon and a cluster of ribosomal protein genes."
    Hilbert H., Himmelreich R., Plagens H., Herrmann R.
    Nucleic Acids Res. 24:628-639(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 29342 / M129.
  2. "Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae."
    Himmelreich R., Hilbert H., Plagens H., Pirkl E., Li B.-C., Herrmann R.
    Nucleic Acids Res. 24:4420-4449(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29342 / M129.

Entry informationi

Entry nameiRL6_MYCPN
AccessioniPrimary (citable) accession number: Q50303
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 1, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Mycoplasma pneumoniae
    Mycoplasma pneumoniae (strain M129): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3