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Q50303

- RL6_MYCPN

UniProt

Q50303 - RL6_MYCPN

Protein

50S ribosomal protein L6

Gene

rplF

Organism
Mycoplasma pneumoniae (strain ATCC 29342 / M129)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciMPNE272634:GJ6Z-187-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L6UniRule annotation
    Gene namesi
    Name:rplFUniRule annotation
    Ordered Locus Names:MPN_180
    ORF Names:MP651
    OrganismiMycoplasma pneumoniae (strain ATCC 29342 / M129)
    Taxonomic identifieri272634 [NCBI]
    Taxonomic lineageiBacteriaTenericutesMollicutesMycoplasmataceaeMycoplasma
    ProteomesiUP000000808: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 18418450S ribosomal protein L6PRO_0000131061Add
    BLAST

    Proteomic databases

    PaxDbiQ50303.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    IntActiQ50303. 1 interaction.
    STRINGi272634.MPN180.

    Structurei

    3D structure databases

    ProteinModelPortaliQ50303.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L6P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0097.
    KOiK02933.
    OMAiAPKQTEI.
    OrthoDBiEOG67DPRD.

    Family and domain databases

    Gene3Di3.90.930.12. 2 hits.
    HAMAPiMF_01365_B. Ribosomal_L6_B.
    InterProiIPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view]
    PANTHERiPTHR11655. PTHR11655. 1 hit.
    PfamiPF00347. Ribosomal_L6. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSiPR00059. RIBOSOMALL6.
    SUPFAMiSSF56053. SSF56053. 2 hits.
    TIGRFAMsiTIGR03654. L6_bact. 1 hit.
    PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q50303-1 [UniParc]FASTAAdd to Basket

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    MSKIGNRTIT LDPAKVNLNF QKDHIAVKGP LGQIELKLPP NLPLKFELKD    50
    NNLQITRNNE LKQSKIFHGT YNALITNAII GVTQGFEKKL RLVGVGYRAN 100
    VEGETLNLQL GYSHPIKEKI PKGLTVKVEK NTEITISGIS KELVGQFATE 150
    VRKWRKPEPY KGKGVLYFDE VIVRKAGKTA EGKK 184
    Length:184
    Mass (Da):20,589
    Last modified:November 1, 1997 - v1
    Checksum:iC92DC101E99C2651
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U34795 Genomic DNA. Translation: AAC43701.1.
    U00089 Genomic DNA. Translation: AAB96299.1.
    PIRiS62827.
    RefSeqiNP_109868.1. NC_000912.1.
    WP_010874537.1. NC_000912.1.

    Genome annotation databases

    EnsemblBacteriaiAAB96299; AAB96299; MPN_180.
    GeneIDi876780.
    KEGGimpn:MPN180.
    PATRICi20021683. VBIMycPne110_0198.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U34795 Genomic DNA. Translation: AAC43701.1 .
    U00089 Genomic DNA. Translation: AAB96299.1 .
    PIRi S62827.
    RefSeqi NP_109868.1. NC_000912.1.
    WP_010874537.1. NC_000912.1.

    3D structure databases

    ProteinModelPortali Q50303.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q50303. 1 interaction.
    STRINGi 272634.MPN180.

    Proteomic databases

    PaxDbi Q50303.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB96299 ; AAB96299 ; MPN_180 .
    GeneIDi 876780.
    KEGGi mpn:MPN180.
    PATRICi 20021683. VBIMycPne110_0198.

    Phylogenomic databases

    eggNOGi COG0097.
    KOi K02933.
    OMAi APKQTEI.
    OrthoDBi EOG67DPRD.

    Enzyme and pathway databases

    BioCyci MPNE272634:GJ6Z-187-MONOMER.

    Family and domain databases

    Gene3Di 3.90.930.12. 2 hits.
    HAMAPi MF_01365_B. Ribosomal_L6_B.
    InterProi IPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR019906. Ribosomal_L6_bac-type.
    IPR002358. Ribosomal_L6_CS.
    [Graphical view ]
    PANTHERi PTHR11655. PTHR11655. 1 hit.
    Pfami PF00347. Ribosomal_L6. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
    PRINTSi PR00059. RIBOSOMALL6.
    SUPFAMi SSF56053. SSF56053. 2 hits.
    TIGRFAMsi TIGR03654. L6_bact. 1 hit.
    PROSITEi PS00525. RIBOSOMAL_L6_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of 56 kb from the genome of the bacterium Mycoplasma pneumoniae comprising the dnaA region, the atp operon and a cluster of ribosomal protein genes."
      Hilbert H., Himmelreich R., Plagens H., Herrmann R.
      Nucleic Acids Res. 24:628-639(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: ATCC 29342 / M129.
    2. "Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae."
      Himmelreich R., Hilbert H., Plagens H., Pirkl E., Li B.-C., Herrmann R.
      Nucleic Acids Res. 24:4420-4449(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 29342 / M129.

    Entry informationi

    Entry nameiRL6_MYCPN
    AccessioniPrimary (citable) accession number: Q50303
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Mycoplasma pneumoniae
      Mycoplasma pneumoniae (strain M129): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3