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Protein

Myb/SANT-like DNA-binding domain-containing protein 4

Gene

Msantd4

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Myb/SANT-like DNA-binding domain-containing protein 4
Gene namesi
Name:Msantd4
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1565380. Msantd4.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 345345Myb/SANT-like DNA-binding domain-containing protein 4PRO_0000311832Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei106 – 1061PhosphoserineCombined sources
Cross-linki142 – 142Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei188 – 1881PhosphothreonineBy similarity

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiQ501L3.

Expressioni

Gene expression databases

GenevisibleiQ501L3. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030251.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 7774Myb-likeAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili202 – 344143Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 Myb-like domain.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410IJBK. Eukaryota.
ENOG4111EBJ. LUCA.
GeneTreeiENSGT00440000039469.
HOGENOMiHOG000113179.
HOVERGENiHBG059495.
InParanoidiQ501L3.
OMAiDTNFDWQ.
OrthoDBiEOG78PVBN.
PhylomeDBiQ501L3.
TreeFamiTF330965.

Family and domain databases

InterProiIPR026162. MSANTD4.
IPR028002. Myb_DNA-bind_5.
[Graphical view]
PANTHERiPTHR21732. PTHR21732. 1 hit.
PfamiPF13873. Myb_DNA-bind_5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q501L3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQLKRKRKS NFSVQETQTL LKEITKRKEV IFSKQLNTTI NVMKRMAWEE
60 70 80 90 100
IAQCVNAVGE GEQRTGTEVK RRYLDWRALM KRKRMKANMK LVGSGFPLPT
110 120 130 140 150
SDLDDSLTED IDEKIAFRND ANFDWQNVAD FRDAGGSLTE VKVEEEERDP
160 170 180 190 200
QSPEFEIEEE EEMLSSVIPD SRRENELPDF PHIDEFFTLN STPSRPTYDE
210 220 230 240 250
PHLLMNIEKQ KLELEKRRLD IEAERLQVEK ERLQIEKERL RHLDLEHERL
260 270 280 290 300
QLEKERLQIE REKWRLQLVS TEKPALENEL GQGEKSMLQP QDIEAEKLKL
310 320 330 340
ERERLQLEKD RLQFLKFESE KLQIEKERLQ VEKERLRIQK EGHLP
Length:345
Mass (Da):41,233
Last modified:June 7, 2005 - v1
Checksum:iB753EB3CE910C550
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC096000 mRNA. Translation: AAH96000.1.
RefSeqiNP_001019528.1. NM_001024357.1.
UniGeneiRn.120559.

Genome annotation databases

EnsembliENSRNOT00000034482; ENSRNOP00000030251; ENSRNOG00000022245.
GeneIDi500941.
KEGGirno:500941.
UCSCiRGD:1565380. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC096000 mRNA. Translation: AAH96000.1.
RefSeqiNP_001019528.1. NM_001024357.1.
UniGeneiRn.120559.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030251.

Proteomic databases

PaxDbiQ501L3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000034482; ENSRNOP00000030251; ENSRNOG00000022245.
GeneIDi500941.
KEGGirno:500941.
UCSCiRGD:1565380. rat.

Organism-specific databases

CTDi84437.
RGDi1565380. Msantd4.

Phylogenomic databases

eggNOGiENOG410IJBK. Eukaryota.
ENOG4111EBJ. LUCA.
GeneTreeiENSGT00440000039469.
HOGENOMiHOG000113179.
HOVERGENiHBG059495.
InParanoidiQ501L3.
OMAiDTNFDWQ.
OrthoDBiEOG78PVBN.
PhylomeDBiQ501L3.
TreeFamiTF330965.

Miscellaneous databases

NextBioi707726.
PROiQ501L3.

Gene expression databases

GenevisibleiQ501L3. RN.

Family and domain databases

InterProiIPR026162. MSANTD4.
IPR028002. Myb_DNA-bind_5.
[Graphical view]
PANTHERiPTHR21732. PTHR21732. 1 hit.
PfamiPF13873. Myb_DNA-bind_5. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Ovary.
  2. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-106, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiMSD4_RAT
AccessioniPrimary (citable) accession number: Q501L3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: June 7, 2005
Last modified: February 17, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.