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Reviewed, UniProtKB/Swiss-Prot Q4ZZW4 (DADA_PSEU2)

Last modified May 5, 2009. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    D-amino acid dehydrogenase small subunit
    EC=1.4.99.1
Gene names
Name: dadA
Ordered Locus Names: Psyr_0235
OrganismPseudomonas syringae pv. syringae (strain B728a) [Complete proteome] [HAMAP]
Taxonomic identifier205918 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Oxidative deamination of D-amino acids By similarity.

Catalytic activity

A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202

Cofactor

FAD By similarity.

Pathway

Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202

Subunit structure

Heterodimer of a small and a large subunit By similarity.

Sequence similarities

Belongs to the dadA oxidoreductase family.

Ontologies

Keywords
   LigandFAD
Flavoprotein
   Molecular functionOxidoreductase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalanine catabolic process

Inferred from electronic annotation. Source: HAMAP

oxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionD-amino-acid dehydrogenase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 433433D-amino acid dehydrogenase small subunit HAMAP MF_01202
PRO_1000066108

Regions

Nucleotide binding3 – 1715FAD Potential

Sequences

Sequence LengthMass (Da)Tools
Q4ZZW4-1 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: 76C71151B139BB43

FASTA43347,175
        10         20         30         40         50         60 
MRVLVLGSGV IGTTSAYYLA RAGFQVTVVD RQPAAAMETS FANAGQVSPG YASPWAAPGV 

        70         80         90        100        110        120 
PLKALKWLLQ RHAPLAIKAT ADIDQYLWMA QMLRNCTASR YAINKERMVR LSEYSRDCLD 

       130        140        150        160        170        180 
ELRLETGIAY EGRSLGTTQL FRTQAQLDNA AKDIAVLEQS GVPYELLDRD GIARVEPALA 

       190        200        210        220        230        240 
GVTGILSGAL RLPNDQTGDC QLFTTRLAEM AVALGVEFRY GQNIERLDHA GDRINGVWID 

       250        260        270        280        290        300 
GKLETADRYV LALGSYSPQL LKPLGIKAPV YPLKGYSLTV PITNPDMAPT STILDETYKV 

       310        320        330        340        350        360 
AITRFDNRIR VGGMAEIAGF DLSLNPRRRE TLEMIVGDLY PQGGDLTQAD FWTGLRPTTP 

       370        380        390        400        410        420 
DGTPIVGATP FRNLFLNTGH GTLGWTMACG SGRLLADLIA RKTPRISAEG LDISRYGNTQ 

       430 
ENAQHVHPAP AHQ 

« Hide

References

[1]"Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000."
Feil H., Feil W.S., Chain P., Larimer F., Dibartolo G., Copeland A., Lykidis A., Trong S., Nolan M., Goltsman E., Thiel J., Malfatti S., Loper J.E., Lapidus A., Detter J.C., Land M., Richardson P.M., Kyrpides N.C., Ivanova N., Lindow S.E.
Proc. Natl. Acad. Sci. U.S.A. 102:11064-11069(2005) [PubMed: 16043691] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

CP000075 Genomic DNA. Translation: AAY35308.1.
RefSeqYP_233346.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3365711.
GenomeReviewsGene locus Psyr_0235 in contig CP000075_GR.
KEGGpsb:Psyr_0235.
NMPDRfig|205918.4.peg.571.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ4ZZW4.
OMAQ4ZZW4. LEHAGGQ.

Enzyme and pathway databases

BioCycPSYR205918:PSYR_0235-MON.

Family and domain databases

HAMAPMF_01202.
[Tree]
InterProIPR006076. FAD-dep_OxRdtase.
[Graphical view]
PfamPF01266. DAO. 1 hit.
[Graphical view]
ProDomPD000139. FAD_pyr_redox. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameDADA_PSEU2
AccessionPrimary (citable) accession number: Q4ZZW4
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: June 7, 2005
Last modified: May 5, 2009
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents