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Q4ZRE5 (Q4ZRE5_PSEU2) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module EMBL AAY38277.1
Gene names
Ordered Locus Names:Psyr_3245
OrganismPseudomonas syringae pv. syringae (strain B728a) [Complete proteome] [HAMAP] EMBL AAY38277.1
Taxonomic identifier205918 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas syringae ›

Protein attributes

Sequence length866 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AAY38277.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q4ZRE5 [UniParc].

Last modified June 7, 2005. Version 1.
Checksum: 65C787F2DAD4539E

FASTA86695,426
        10         20         30         40         50         60 
MAKPASEYTR KRNFAITSEP AESKRKGKGK SQPGALGFVI QKHDARNLHY DFRLELDGTL 

        70         80         90        100        110        120 
KSWAVPKGPS LDPTQKRLAV HVEDHPLDYA GFEGSIPQGQ YGGGDVIVWD RGVWQPHGDP 

       130        140        150        160        170        180 
QKTYEEGKLK FTLVGEKLSG DWALVRTRLK GSGSKEQWLL IKEKDDVARP AAEYDITHEQ 

       190        200        210        220        230        240 
PQSVISGAHV GKQRGTSKKS GASAAKAKAA TPAAAKASMP AAKPARRKAK SAFLDTLAPQ 

       250        260        270        280        290        300 
LATLVEAPPA GDWLYEIKFD GYRMLTRIQG DDVRLFTRNG HDWTERLPEL VKALKGMKLR 

       310        320        330        340        350        360 
DSWFDGEVVV LDEQGLPDFQ GLQNAFDAGN SKDILYYLFD MPFLSAEDLR EVPLEQRRDA 

       370        380        390        400        410        420 
LKQVLDAQKS RLLRYSDAFQ AGHQDIVASA AAMGLEGVIG KRAGSAYVSK RNADWIKLKC 

       430        440        450        460        470        480 
RLRQEFVVVG YTAPQGSRSA FGALLLAVNA GEDGLIYAGR VGTGFTEVSL EQLHKQLKKL 

       490        500        510        520        530        540 
QRKDSPLAKK LSASQARGVQ WVAPQLVCEA EFAQWTREGI VRQAAFVGLR SDKPAKDVVR 

       550        560        570        580        590        600 
EDAQPAKVAS QPPTTTAAPK ARKKAAQGKV DVAGTGISHP DRVIDSKSGT SKIELAQFYQ 

       610        620        630        640        650        660 
SIADWILPYL NKRPVALLRC PEGIDGEQFF QKHAEHLAIP HIRQLDRALD PGHAALMEID 

       670        680        690        700        710        720 
SVPALVGAAQ MGAIELHTWG ATRDRIETPD HFVLDLDPDP ALPWRSMIEA TQMVLAVLEE 

       730        740        750        760        770        780 
LGLEAFLKTS GGKGMHIIVP LARQADWDTV KAFAKAIAEF ASRQLPERFT ATMGPKNRVG 

       790        800        810        820        830        840 
KIFIDYLRNS RGGSTVTAYS VRARPGLPVS VPIALDELAG LKSSAQWDIT NLEQRLKRLK 

       850        860 
DDPWAGYSNR RKITQRMWKQ LGAKRP

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References

[1]"Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000."
Feil H., Feil W.S., Chain P., Larimer F., Dibartolo G., Copeland A., Lykidis A., Trong S., Nolan M., Goltsman E., Thiel J., Malfatti S., Loper J.E., Lapidus A., Detter J.C., Land M., Richardson P.M., Kyrpides N.C., Ivanova N., Lindow S.E.
Proc. Natl. Acad. Sci. U.S.A. 102:11064-11069(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: B728a.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000075 Genomic DNA. Translation: AAY38277.1.
RefSeqYP_236315.1. NC_007005.1.

3D structure databases

ProteinModelPortalQ4ZRE5.
SMRQ4ZRE5. Positions 569-861.
ModBaseSearch...

Protein-protein interaction databases

STRING205918.Psyr_3245.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY38277; AAY38277; Psyr_3245.
GeneID3368772.
KEGGpsb:Psyr_3245.
PATRIC19987116. VBIPseSyr42314_3314.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMALVAECEF.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycPSYR205918:GJ94-3297-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ4ZRE5_PSEU2
AccessionPrimary (citable) accession number: Q4ZRE5
Entry history
Integrated into UniProtKB/TrEMBL: June 7, 2005
Last sequence update: June 7, 2005
Last modified: May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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