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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Psyr_3245

Organism
Pseudomonas syringae pv. syringae (strain B728a)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSYR205918:GJ94-3297-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
Gene namesi
Ordered Locus Names:Psyr_3245Imported
OrganismiPseudomonas syringae pv. syringae (strain B728a)Imported
Taxonomic identifieri205918 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonasPseudomonas syringae
ProteomesiUP000000426 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi205918.Psyr_3245.

Structurei

3D structure databases

ProteinModelPortaliQ4ZRE5.
SMRiQ4ZRE5. Positions 569-861.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4ZRE5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKPASEYTR KRNFAITSEP AESKRKGKGK SQPGALGFVI QKHDARNLHY
60 70 80 90 100
DFRLELDGTL KSWAVPKGPS LDPTQKRLAV HVEDHPLDYA GFEGSIPQGQ
110 120 130 140 150
YGGGDVIVWD RGVWQPHGDP QKTYEEGKLK FTLVGEKLSG DWALVRTRLK
160 170 180 190 200
GSGSKEQWLL IKEKDDVARP AAEYDITHEQ PQSVISGAHV GKQRGTSKKS
210 220 230 240 250
GASAAKAKAA TPAAAKASMP AAKPARRKAK SAFLDTLAPQ LATLVEAPPA
260 270 280 290 300
GDWLYEIKFD GYRMLTRIQG DDVRLFTRNG HDWTERLPEL VKALKGMKLR
310 320 330 340 350
DSWFDGEVVV LDEQGLPDFQ GLQNAFDAGN SKDILYYLFD MPFLSAEDLR
360 370 380 390 400
EVPLEQRRDA LKQVLDAQKS RLLRYSDAFQ AGHQDIVASA AAMGLEGVIG
410 420 430 440 450
KRAGSAYVSK RNADWIKLKC RLRQEFVVVG YTAPQGSRSA FGALLLAVNA
460 470 480 490 500
GEDGLIYAGR VGTGFTEVSL EQLHKQLKKL QRKDSPLAKK LSASQARGVQ
510 520 530 540 550
WVAPQLVCEA EFAQWTREGI VRQAAFVGLR SDKPAKDVVR EDAQPAKVAS
560 570 580 590 600
QPPTTTAAPK ARKKAAQGKV DVAGTGISHP DRVIDSKSGT SKIELAQFYQ
610 620 630 640 650
SIADWILPYL NKRPVALLRC PEGIDGEQFF QKHAEHLAIP HIRQLDRALD
660 670 680 690 700
PGHAALMEID SVPALVGAAQ MGAIELHTWG ATRDRIETPD HFVLDLDPDP
710 720 730 740 750
ALPWRSMIEA TQMVLAVLEE LGLEAFLKTS GGKGMHIIVP LARQADWDTV
760 770 780 790 800
KAFAKAIAEF ASRQLPERFT ATMGPKNRVG KIFIDYLRNS RGGSTVTAYS
810 820 830 840 850
VRARPGLPVS VPIALDELAG LKSSAQWDIT NLEQRLKRLK DDPWAGYSNR
860
RKITQRMWKQ LGAKRP
Length:866
Mass (Da):95,426
Last modified:June 7, 2005 - v1
Checksum:i65C787F2DAD4539E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000075 Genomic DNA. Translation: AAY38277.1.
RefSeqiWP_011268303.1. NC_007005.1.
YP_236315.1. NC_007005.1.

Genome annotation databases

EnsemblBacteriaiAAY38277; AAY38277; Psyr_3245.
GeneIDi3368772.
KEGGipsb:Psyr_3245.
PATRICi19987116. VBIPseSyr42314_3314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000075 Genomic DNA. Translation: AAY38277.1.
RefSeqiWP_011268303.1. NC_007005.1.
YP_236315.1. NC_007005.1.

3D structure databases

ProteinModelPortaliQ4ZRE5.
SMRiQ4ZRE5. Positions 569-861.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi205918.Psyr_3245.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAY38277; AAY38277; Psyr_3245.
GeneIDi3368772.
KEGGipsb:Psyr_3245.
PATRICi19987116. VBIPseSyr42314_3314.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPSYR205918:GJ94-3297-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: B728aImported.

Entry informationi

Entry nameiQ4ZRE5_PSEU2
AccessioniPrimary (citable) accession number: Q4ZRE5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 7, 2005
Last sequence update: June 7, 2005
Last modified: April 29, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.