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Q4ZRE5

- Q4ZRE5_PSEU2

UniProt

Q4ZRE5 - Q4ZRE5_PSEU2

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Psyr_3245

Organism
Pseudomonas syringae pv. syringae (strain B728a)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (07 Jun 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSYR205918:GJ94-3297-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported
    Gene namesi
    Ordered Locus Names:Psyr_3245Imported
    OrganismiPseudomonas syringae pv. syringae (strain B728a)Imported
    Taxonomic identifieri205918 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonasPseudomonas syringae
    ProteomesiUP000000426: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi205918.Psyr_3245.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4ZRE5.
    SMRiQ4ZRE5. Positions 569-861.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4ZRE5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKPASEYTR KRNFAITSEP AESKRKGKGK SQPGALGFVI QKHDARNLHY    50
    DFRLELDGTL KSWAVPKGPS LDPTQKRLAV HVEDHPLDYA GFEGSIPQGQ 100
    YGGGDVIVWD RGVWQPHGDP QKTYEEGKLK FTLVGEKLSG DWALVRTRLK 150
    GSGSKEQWLL IKEKDDVARP AAEYDITHEQ PQSVISGAHV GKQRGTSKKS 200
    GASAAKAKAA TPAAAKASMP AAKPARRKAK SAFLDTLAPQ LATLVEAPPA 250
    GDWLYEIKFD GYRMLTRIQG DDVRLFTRNG HDWTERLPEL VKALKGMKLR 300
    DSWFDGEVVV LDEQGLPDFQ GLQNAFDAGN SKDILYYLFD MPFLSAEDLR 350
    EVPLEQRRDA LKQVLDAQKS RLLRYSDAFQ AGHQDIVASA AAMGLEGVIG 400
    KRAGSAYVSK RNADWIKLKC RLRQEFVVVG YTAPQGSRSA FGALLLAVNA 450
    GEDGLIYAGR VGTGFTEVSL EQLHKQLKKL QRKDSPLAKK LSASQARGVQ 500
    WVAPQLVCEA EFAQWTREGI VRQAAFVGLR SDKPAKDVVR EDAQPAKVAS 550
    QPPTTTAAPK ARKKAAQGKV DVAGTGISHP DRVIDSKSGT SKIELAQFYQ 600
    SIADWILPYL NKRPVALLRC PEGIDGEQFF QKHAEHLAIP HIRQLDRALD 650
    PGHAALMEID SVPALVGAAQ MGAIELHTWG ATRDRIETPD HFVLDLDPDP 700
    ALPWRSMIEA TQMVLAVLEE LGLEAFLKTS GGKGMHIIVP LARQADWDTV 750
    KAFAKAIAEF ASRQLPERFT ATMGPKNRVG KIFIDYLRNS RGGSTVTAYS 800
    VRARPGLPVS VPIALDELAG LKSSAQWDIT NLEQRLKRLK DDPWAGYSNR 850
    RKITQRMWKQ LGAKRP 866
    Length:866
    Mass (Da):95,426
    Last modified:June 7, 2005 - v1
    Checksum:i65C787F2DAD4539E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000075 Genomic DNA. Translation: AAY38277.1.
    RefSeqiWP_011268303.1. NC_007005.1.
    YP_236315.1. NC_007005.1.

    Genome annotation databases

    EnsemblBacteriaiAAY38277; AAY38277; Psyr_3245.
    GeneIDi3368772.
    KEGGipsb:Psyr_3245.
    PATRICi19987116. VBIPseSyr42314_3314.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000075 Genomic DNA. Translation: AAY38277.1 .
    RefSeqi WP_011268303.1. NC_007005.1.
    YP_236315.1. NC_007005.1.

    3D structure databases

    ProteinModelPortali Q4ZRE5.
    SMRi Q4ZRE5. Positions 569-861.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 205918.Psyr_3245.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY38277 ; AAY38277 ; Psyr_3245 .
    GeneIDi 3368772.
    KEGGi psb:Psyr_3245.
    PATRICi 19987116. VBIPseSyr42314_3314.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PSYR205918:GJ94-3297-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: B728aImported.

    Entry informationi

    Entry nameiQ4ZRE5_PSEU2
    AccessioniPrimary (citable) accession number: Q4ZRE5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 7, 2005
    Last sequence update: June 7, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3