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Q4YVG1

- Q4YVG1_PLABA

UniProt

Q4YVG1 - Q4YVG1_PLABA

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Protein

DNA ligase

Gene

PB000674.02.0

Organism
Plasmodium berghei (strain Anka)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PB000674.02.0Imported
OrganismiPlasmodium berghei (strain Anka)Imported
Taxonomic identifieri5823 [NCBI]
Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
ProteomesiUP000007720: Unassembled WGS sequence

Organism-specific databases

EuPathDBiPlasmoDB:PBANKA_140260.

Structurei

3D structure databases

ProteinModelPortaliQ4YVG1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000036006.
InParanoidiQ4YVG1.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4YVG1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLLLLILLT KMFFCKIKRY MRTEYNYVTP FMKSKLFHNY KNKFNVIILK
60 70 80 90 100
NIRNNVPNRN DKYLKCLSFP KKLDGGEQCD TKIEETHVKN EEKEASKRKN
110 120 130 140 150
TNDDSAKTKK SKVKNENEIK KGSLFNCKVY EDEKISDLTS PKFNPANFDI
160 170 180 190 200
SNLCLSEKDK IKHKFKDSLL FTFLTNTFNQ IEELKGSGAG SKKNVAIILS
210 220 230 240 250
NVFRVLIYYS PNDLIPAVYI TLNKVAPDYQ NVEAGVGEAL ILKTMSEAYS
260 270 280 290 300
RTETSIKKDL QQIEDLGIIA ESCSCKMRTI FPLPLTIQSV FNELKSIPNI
310 320 330 340 350
SGSNSQQKKR EVIKKLLVSA KTSEAKYIVR FLQQRLRIGV NSATVLQALA
360 370 380 390 400
YAFVLTRPEI PENIIKDGKM MNEKLLNEQT MVKGDKDNCN DGTTEVKNEN
410 420 430 440 450
DIKLEKQNDT DNKTNMLDID QFNNLVKSIK IRNERMSKPN LFFNIGKEGD
460 470 480 490 500
TRLLPIFKEL KNAYCDINND SDIFECMEKS VKSALCELPN IEMIIQNLLS
510 520 530 540 550
GDDMNVLMKK CTVKTGVPVQ PMLAKPTKGI QEVLDRFNNV TFTCEYKYDG
560 570 580 590 600
ERAQIHYIDK DNIKIFSRNL ETMTEKYPDV IQIVKDQIMP GVTESIIDSE
610 620 630 640 650
VVAYDIENKK ILPFQILTTR KRKDVDIENI KVKICLFPFD LICCNGIPVI
660 670 680 690 700
KEPLEIRRKL LYSLLKCKEG VLEYATHSEM NNIDDIDIFL QDAIENNCEG
710 720 730 740 750
LMVKTLLDNA SYEPSRRSLN WLKVKKDYIE GLSDSVDLVP IAGYYGKGKR
760 770 780 790 800
SGVYGAFVLA AYNSETENFQ TVCKAGTGFS DEILNALHES LSDKIIPNKK
810 820 830 840 850
SYYEVSDKLN PDVWFDAHYV WEIKAADLSL SPVHTAAIGV YSDDKGIGLR
860 870 880 890
FPRFLRLRDD KNPEQATTAQ QIVEFYEAQF ASKKNKNNNY NDESGSE
Length:897
Mass (Da):102,547
Last modified:July 5, 2005 - v1
Checksum:i7B6045DEAC2307B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAI01002272 Genomic DNA. Translation: CAH97995.1.
RefSeqiXP_677122.1. XM_672030.1.

Genome annotation databases

GeneIDi3425646.
KEGGipbe:PB000674.02.0.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAI01002272 Genomic DNA. Translation: CAH97995.1 .
RefSeqi XP_677122.1. XM_672030.1.

3D structure databases

ProteinModelPortali Q4YVG1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3425646.
KEGGi pbe:PB000674.02.0.

Organism-specific databases

EuPathDBi PlasmoDB:PBANKA_140260.

Phylogenomic databases

HOGENOMi HOG000036006.
InParanoidi Q4YVG1.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ANKAImported.

Entry informationi

Entry nameiQ4YVG1_PLABA
AccessioniPrimary (citable) accession number: Q4YVG1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: October 29, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3