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Q4YVG1

- Q4YVG1_PLABA

UniProt

Q4YVG1 - Q4YVG1_PLABA

Protein

DNA ligase

Gene

PB000674.02.0

Organism
Plasmodium berghei (strain Anka)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 52 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:PB000674.02.0Imported
    OrganismiPlasmodium berghei (strain Anka)Imported
    Taxonomic identifieri5823 [NCBI]
    Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
    ProteomesiUP000007720: Unassembled WGS sequence

    Organism-specific databases

    EuPathDBiPlasmoDB:PBANKA_140260.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4YVG1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    HOGENOMiHOG000036006.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4YVG1-1 [UniParc]FASTAAdd to Basket

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    MKLLLLILLT KMFFCKIKRY MRTEYNYVTP FMKSKLFHNY KNKFNVIILK    50
    NIRNNVPNRN DKYLKCLSFP KKLDGGEQCD TKIEETHVKN EEKEASKRKN 100
    TNDDSAKTKK SKVKNENEIK KGSLFNCKVY EDEKISDLTS PKFNPANFDI 150
    SNLCLSEKDK IKHKFKDSLL FTFLTNTFNQ IEELKGSGAG SKKNVAIILS 200
    NVFRVLIYYS PNDLIPAVYI TLNKVAPDYQ NVEAGVGEAL ILKTMSEAYS 250
    RTETSIKKDL QQIEDLGIIA ESCSCKMRTI FPLPLTIQSV FNELKSIPNI 300
    SGSNSQQKKR EVIKKLLVSA KTSEAKYIVR FLQQRLRIGV NSATVLQALA 350
    YAFVLTRPEI PENIIKDGKM MNEKLLNEQT MVKGDKDNCN DGTTEVKNEN 400
    DIKLEKQNDT DNKTNMLDID QFNNLVKSIK IRNERMSKPN LFFNIGKEGD 450
    TRLLPIFKEL KNAYCDINND SDIFECMEKS VKSALCELPN IEMIIQNLLS 500
    GDDMNVLMKK CTVKTGVPVQ PMLAKPTKGI QEVLDRFNNV TFTCEYKYDG 550
    ERAQIHYIDK DNIKIFSRNL ETMTEKYPDV IQIVKDQIMP GVTESIIDSE 600
    VVAYDIENKK ILPFQILTTR KRKDVDIENI KVKICLFPFD LICCNGIPVI 650
    KEPLEIRRKL LYSLLKCKEG VLEYATHSEM NNIDDIDIFL QDAIENNCEG 700
    LMVKTLLDNA SYEPSRRSLN WLKVKKDYIE GLSDSVDLVP IAGYYGKGKR 750
    SGVYGAFVLA AYNSETENFQ TVCKAGTGFS DEILNALHES LSDKIIPNKK 800
    SYYEVSDKLN PDVWFDAHYV WEIKAADLSL SPVHTAAIGV YSDDKGIGLR 850
    FPRFLRLRDD KNPEQATTAQ QIVEFYEAQF ASKKNKNNNY NDESGSE 897
    Length:897
    Mass (Da):102,547
    Last modified:July 5, 2005 - v1
    Checksum:i7B6045DEAC2307B8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CAAI01002272 Genomic DNA. Translation: CAH97995.1.
    RefSeqiXP_677122.1. XM_672030.1.

    Genome annotation databases

    GeneIDi3425646.
    KEGGipbe:PB000674.02.0.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CAAI01002272 Genomic DNA. Translation: CAH97995.1 .
    RefSeqi XP_677122.1. XM_672030.1.

    3D structure databases

    ProteinModelPortali Q4YVG1.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3425646.
    KEGGi pbe:PB000674.02.0.

    Organism-specific databases

    EuPathDBi PlasmoDB:PBANKA_140260.

    Phylogenomic databases

    HOGENOMi HOG000036006.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 2 hits.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ANKAImported.

    Entry informationi

    Entry nameiQ4YVG1_PLABA
    AccessioniPrimary (citable) accession number: Q4YVG1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2005
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 52 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3