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Q4YVG1

- Q4YVG1_PLABA

UniProt

Q4YVG1 - Q4YVG1_PLABA

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Protein

DNA ligase

Gene
PB000674.02.0
Organism
Plasmodium berghei (strain Anka)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PB000674.02.0Imported
OrganismiPlasmodium berghei (strain Anka)
Taxonomic identifieri5823 [NCBI]
Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
ProteomesiUP000007720: Unassembled WGS sequence

Organism-specific databases

EuPathDBiPlasmoDB:PBANKA_140260.

Structurei

3D structure databases

ProteinModelPortaliQ4YVG1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000036006.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4YVG1-1 [UniParc]FASTAAdd to Basket

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MKLLLLILLT KMFFCKIKRY MRTEYNYVTP FMKSKLFHNY KNKFNVIILK    50
NIRNNVPNRN DKYLKCLSFP KKLDGGEQCD TKIEETHVKN EEKEASKRKN 100
TNDDSAKTKK SKVKNENEIK KGSLFNCKVY EDEKISDLTS PKFNPANFDI 150
SNLCLSEKDK IKHKFKDSLL FTFLTNTFNQ IEELKGSGAG SKKNVAIILS 200
NVFRVLIYYS PNDLIPAVYI TLNKVAPDYQ NVEAGVGEAL ILKTMSEAYS 250
RTETSIKKDL QQIEDLGIIA ESCSCKMRTI FPLPLTIQSV FNELKSIPNI 300
SGSNSQQKKR EVIKKLLVSA KTSEAKYIVR FLQQRLRIGV NSATVLQALA 350
YAFVLTRPEI PENIIKDGKM MNEKLLNEQT MVKGDKDNCN DGTTEVKNEN 400
DIKLEKQNDT DNKTNMLDID QFNNLVKSIK IRNERMSKPN LFFNIGKEGD 450
TRLLPIFKEL KNAYCDINND SDIFECMEKS VKSALCELPN IEMIIQNLLS 500
GDDMNVLMKK CTVKTGVPVQ PMLAKPTKGI QEVLDRFNNV TFTCEYKYDG 550
ERAQIHYIDK DNIKIFSRNL ETMTEKYPDV IQIVKDQIMP GVTESIIDSE 600
VVAYDIENKK ILPFQILTTR KRKDVDIENI KVKICLFPFD LICCNGIPVI 650
KEPLEIRRKL LYSLLKCKEG VLEYATHSEM NNIDDIDIFL QDAIENNCEG 700
LMVKTLLDNA SYEPSRRSLN WLKVKKDYIE GLSDSVDLVP IAGYYGKGKR 750
SGVYGAFVLA AYNSETENFQ TVCKAGTGFS DEILNALHES LSDKIIPNKK 800
SYYEVSDKLN PDVWFDAHYV WEIKAADLSL SPVHTAAIGV YSDDKGIGLR 850
FPRFLRLRDD KNPEQATTAQ QIVEFYEAQF ASKKNKNNNY NDESGSE 897
Length:897
Mass (Da):102,547
Last modified:July 5, 2005 - v1
Checksum:i7B6045DEAC2307B8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAI01002272 Genomic DNA. Translation: CAH97995.1.
RefSeqiXP_677122.1. XM_672030.1.

Genome annotation databases

GeneIDi3425646.
KEGGipbe:PB000674.02.0.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAI01002272 Genomic DNA. Translation: CAH97995.1 .
RefSeqi XP_677122.1. XM_672030.1.

3D structure databases

ProteinModelPortali Q4YVG1.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3425646.
KEGGi pbe:PB000674.02.0.

Organism-specific databases

EuPathDBi PlasmoDB:PBANKA_140260.

Phylogenomic databases

HOGENOMi HOG000036006.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ANKA.

Entry informationi

Entry nameiQ4YVG1_PLABA
AccessioniPrimary (citable) accession number: Q4YVG1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: October 16, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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