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Q4YVG1 (Q4YVG1_PLABA) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:PB000674.02.0 EMBL CAH97995.1
OrganismPlasmodium berghei (strain Anka) [Reference proteome]
Taxonomic identifier5823 [NCBI]
Taxonomic lineageEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)

Protein attributes

Sequence length897 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
Q4YVG1 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 7B6045DEAC2307B8

FASTA897102,547
        10         20         30         40         50         60 
MKLLLLILLT KMFFCKIKRY MRTEYNYVTP FMKSKLFHNY KNKFNVIILK NIRNNVPNRN 

        70         80         90        100        110        120 
DKYLKCLSFP KKLDGGEQCD TKIEETHVKN EEKEASKRKN TNDDSAKTKK SKVKNENEIK 

       130        140        150        160        170        180 
KGSLFNCKVY EDEKISDLTS PKFNPANFDI SNLCLSEKDK IKHKFKDSLL FTFLTNTFNQ 

       190        200        210        220        230        240 
IEELKGSGAG SKKNVAIILS NVFRVLIYYS PNDLIPAVYI TLNKVAPDYQ NVEAGVGEAL 

       250        260        270        280        290        300 
ILKTMSEAYS RTETSIKKDL QQIEDLGIIA ESCSCKMRTI FPLPLTIQSV FNELKSIPNI 

       310        320        330        340        350        360 
SGSNSQQKKR EVIKKLLVSA KTSEAKYIVR FLQQRLRIGV NSATVLQALA YAFVLTRPEI 

       370        380        390        400        410        420 
PENIIKDGKM MNEKLLNEQT MVKGDKDNCN DGTTEVKNEN DIKLEKQNDT DNKTNMLDID 

       430        440        450        460        470        480 
QFNNLVKSIK IRNERMSKPN LFFNIGKEGD TRLLPIFKEL KNAYCDINND SDIFECMEKS 

       490        500        510        520        530        540 
VKSALCELPN IEMIIQNLLS GDDMNVLMKK CTVKTGVPVQ PMLAKPTKGI QEVLDRFNNV 

       550        560        570        580        590        600 
TFTCEYKYDG ERAQIHYIDK DNIKIFSRNL ETMTEKYPDV IQIVKDQIMP GVTESIIDSE 

       610        620        630        640        650        660 
VVAYDIENKK ILPFQILTTR KRKDVDIENI KVKICLFPFD LICCNGIPVI KEPLEIRRKL 

       670        680        690        700        710        720 
LYSLLKCKEG VLEYATHSEM NNIDDIDIFL QDAIENNCEG LMVKTLLDNA SYEPSRRSLN 

       730        740        750        760        770        780 
WLKVKKDYIE GLSDSVDLVP IAGYYGKGKR SGVYGAFVLA AYNSETENFQ TVCKAGTGFS 

       790        800        810        820        830        840 
DEILNALHES LSDKIIPNKK SYYEVSDKLN PDVWFDAHYV WEIKAADLSL SPVHTAAIGV 

       850        860        870        880        890 
YSDDKGIGLR FPRFLRLRDD KNPEQATTAQ QIVEFYEAQF ASKKNKNNNY NDESGSE 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CAAI01002272 Genomic DNA. Translation: CAH97995.1.
RefSeqXP_677122.1. XM_672030.1.

3D structure databases

ProteinModelPortalQ4YVG1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3425646.
KEGGpbe:PB000674.02.0.

Organism-specific databases

EuPathDBPlasmoDB:PBANKA_140260.

Phylogenomic databases

HOGENOMHOG000036006.
KOK10747.

Family and domain databases

Gene3D1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ4YVG1_PLABA
AccessionPrimary (citable) accession number: Q4YVG1
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: October 16, 2013
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)