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Q4Y3G9

- Q4Y3G9_PLACH

UniProt

Q4Y3G9 - Q4Y3G9_PLACH

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Protein

DNA ligase

Gene
PC000404.01.0
Organism
Plasmodium chabaudi
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:PC000404.01.0Imported
OrganismiPlasmodium chabaudi
Taxonomic identifieri5825 [NCBI]
Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
ProteomesiUP000002509: Unassembled WGS genome

Organism-specific databases

EuPathDBiPlasmoDB:PCHAS_140450.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000036006.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q4Y3G9-1 [UniParc]FASTAAdd to Basket

« Hide

YCDVNNDSDI FECMEKSVKS ALCELPNIEM IIQNLLNGDD MNVLMKKCTV    50
KTGVPVQPML AKPTKGIQEV LDRFNNVTFT CEYKYDGERA QIHYIDKDNI 100
KIFSRNLETM TEKYPDVIQI VKDQIMPGVT ESIIDSEVVA YDIENKKILP 150
FQILTTRKRK DVDIENIKVK ICLFPFDLIC CNGVPVIKEP LEIRRKLLYS 200
LLKCKEGVLE YATHSEMNNI EDIDMFLQDA IENSCEGLMV KTLLDNASYE 250
PSRRSLNWLK VKKDYIEGLS DSVDLVPIAG YYGKGKRSGV YGAFVLAAYN 300
SETENFQTVC KAGTGFSDEI LNALHESLSD KIIPNKKSYY EVSDKLNPDV 350
WFDAHYVWEI KAADLSLSPV HTAAIGVYSD DKGIGLRFPR FLRLRDDKNP 400
EQATTTQQIV EFYEAQFASN KNKNNYNDDS GSE 433
Length:433
Mass (Da):49,312
Last modified:July 5, 2005 - v1
Checksum:i9249090F9A24FB8C
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAJ01001348 Genomic DNA. Translation: CAH76291.1.
RefSeqiXP_743454.1. XM_738361.1.

Genome annotation databases

GeneIDi3496557.
KEGGipcb:PC000404.01.0.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CAAJ01001348 Genomic DNA. Translation: CAH76291.1 .
RefSeqi XP_743454.1. XM_738361.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 3496557.
KEGGi pcb:PC000404.01.0.

Organism-specific databases

EuPathDBi PlasmoDB:PCHAS_140450.

Phylogenomic databases

HOGENOMi HOG000036006.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AS.

Entry informationi

Entry nameiQ4Y3G9_PLACH
AccessioniPrimary (citable) accession number: Q4Y3G9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: October 16, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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