Q4Y3G9 (Q4Y3G9_PLACH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

PC000404.01.0 EMBL CAH76291.1

Organism

Plasmodium chabaudi [Reference proteome]

Taxonomic identifier

5825 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Alveolata › Apicomplexa › Aconoidasida › Haemosporida › Plasmodium › Plasmodium (Vinckeia)

Protein attributes

Sequence length	433 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL CAH76291.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL CAH76291.1

Sequences

	Sequence		Length	Mass (Da)
	Q4Y3G9 [UniParc]. Last modified July 5, 2005. Version 1. Checksum: 9249090F9A24FB8C	FASTA	433	49,312
	10 20 30 40 50 60 YCDVNNDSDI FECMEKSVKS ALCELPNIEM IIQNLLNGDD MNVLMKKCTV KTGVPVQPML 70 80 90 100 110 120 AKPTKGIQEV LDRFNNVTFT CEYKYDGERA QIHYIDKDNI KIFSRNLETM TEKYPDVIQI 130 140 150 160 170 180 VKDQIMPGVT ESIIDSEVVA YDIENKKILP FQILTTRKRK DVDIENIKVK ICLFPFDLIC 190 200 210 220 230 240 CNGVPVIKEP LEIRRKLLYS LLKCKEGVLE YATHSEMNNI EDIDMFLQDA IENSCEGLMV 250 260 270 280 290 300 KTLLDNASYE PSRRSLNWLK VKKDYIEGLS DSVDLVPIAG YYGKGKRSGV YGAFVLAAYN 310 320 330 340 350 360 SETENFQTVC KAGTGFSDEI LNALHESLSD KIIPNKKSYY EVSDKLNPDV WFDAHYVWEI 370 380 390 400 410 420 KAADLSLSPV HTAAIGVYSD DKGIGLRFPR FLRLRDDKNP EQATTTQQIV EFYEAQFASN 430 KNKNNYNDDS GSE

References

[1]

"A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses." Hall N., Karras M., Raine J.D., Carlton J.M., Kooij T.W.A., Berriman M., Florens L., Janssen C.S., Pain A., Christophides G.K., James K., Rutherford K., Harris B., Harris D., Churcher C.M., Quail M.A., Ormond D., Doggett J. , Trueman H.E., Mendoza J., Bidwell S.L., Rajandream M.A., Carucci D.J., Yates J.R. III, Kafatos F.C., Janse C.J., Barrell B.G., Turner C.M.R., Waters A.P., Sinden R.S. Science 307:82-86(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AS.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CAAJ01001348 Genomic DNA. Translation: CAH76291.1.
RefSeq	XP_743454.1. XM_738361.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3496557.
KEGG	pcb:PC000404.01.0.
Organism-specific databases
EuPathDB	PlasmoDB:PCHAS_140450.
Phylogenomic databases
HOGENOM	HOG000036006.
KO	K10747.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q4Y3G9_PLACH

Accession

Primary (citable) accession number: Q4Y3G9

Entry history

Integrated into UniProtKB/TrEMBL:	July 5, 2005
Last sequence update:	July 5, 2005
Last modified:	March 6, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)