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Q4Y3G9

- Q4Y3G9_PLACH

UniProt

Q4Y3G9 - Q4Y3G9_PLACH

Protein

DNA ligase

Gene

PC000404.01.0

Organism
Plasmodium chabaudi
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:PC000404.01.0Imported
    OrganismiPlasmodium chabaudiImported
    Taxonomic identifieri5825 [NCBI]
    Taxonomic lineageiEukaryotaAlveolataApicomplexaAconoidasidaHaemosporidaPlasmodiumPlasmodium (Vinckeia)
    ProteomesiUP000002509: Unassembled WGS genome

    Organism-specific databases

    EuPathDBiPlasmoDB:PCHAS_140450.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000036006.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q4Y3G9-1 [UniParc]FASTAAdd to Basket

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    YCDVNNDSDI FECMEKSVKS ALCELPNIEM IIQNLLNGDD MNVLMKKCTV    50
    KTGVPVQPML AKPTKGIQEV LDRFNNVTFT CEYKYDGERA QIHYIDKDNI 100
    KIFSRNLETM TEKYPDVIQI VKDQIMPGVT ESIIDSEVVA YDIENKKILP 150
    FQILTTRKRK DVDIENIKVK ICLFPFDLIC CNGVPVIKEP LEIRRKLLYS 200
    LLKCKEGVLE YATHSEMNNI EDIDMFLQDA IENSCEGLMV KTLLDNASYE 250
    PSRRSLNWLK VKKDYIEGLS DSVDLVPIAG YYGKGKRSGV YGAFVLAAYN 300
    SETENFQTVC KAGTGFSDEI LNALHESLSD KIIPNKKSYY EVSDKLNPDV 350
    WFDAHYVWEI KAADLSLSPV HTAAIGVYSD DKGIGLRFPR FLRLRDDKNP 400
    EQATTTQQIV EFYEAQFASN KNKNNYNDDS GSE 433
    Length:433
    Mass (Da):49,312
    Last modified:July 5, 2005 - v1
    Checksum:i9249090F9A24FB8C
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CAAJ01001348 Genomic DNA. Translation: CAH76291.1.
    RefSeqiXP_743454.1. XM_738361.1.

    Genome annotation databases

    GeneIDi3496557.
    KEGGipcb:PC000404.01.0.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CAAJ01001348 Genomic DNA. Translation: CAH76291.1 .
    RefSeqi XP_743454.1. XM_738361.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 3496557.
    KEGGi pcb:PC000404.01.0.

    Organism-specific databases

    EuPathDBi PlasmoDB:PCHAS_140450.

    Phylogenomic databases

    HOGENOMi HOG000036006.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ASImported.

    Entry informationi

    Entry nameiQ4Y3G9_PLACH
    AccessioniPrimary (citable) accession number: Q4Y3G9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2005
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3