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Q4W8D0

- GLN13_ORYSJ

UniProt

Q4W8D0 - GLN13_ORYSJ

Protein

Glutamine synthetase cytosolic isozyme 1-3

Gene

GLN1-3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine.

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. copper ion binding Source: EnsemblPlants/Gramene
    3. glutamate-ammonia ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. glutamine biosynthetic process Source: InterPro
    2. nitrogen fixation Source: UniProtKB-KW
    3. response to cadmium ion Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Nitrogen fixation

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glutamine synthetase cytosolic isozyme 1-3 (EC:6.3.1.2)
    Alternative name(s):
    Glutamate--ammonia ligase GLN1;3
    Short name:
    OsGLN1;3
    OsGS1;3
    Gene namesi
    Name:GLN1-3
    Ordered Locus Names:Os03g0712800, LOC_Os03g50490
    ORF Names:OSJNBb0033N16.19
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ4W8D0.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: EnsemblPlants/Gramene
    2. cytosolic ribosome Source: EnsemblPlants/Gramene
    3. plasma membrane Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 370370Glutamine synthetase cytosolic isozyme 1-3PRO_0000239822Add
    BLAST

    Proteomic databases

    PaxDbiQ4W8D0.
    PRIDEiQ4W8D0.

    Expressioni

    Tissue specificityi

    Expressed at low levels in spikelets (rice flower).1 Publication

    Interactioni

    Subunit structurei

    Homooctamer.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ4W8D0.
    SMRiQ4W8D0. Positions 6-357.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glutamine synthetase family.Curated

    Phylogenomic databases

    eggNOGiCOG0174.
    HOGENOMiHOG000061500.
    KOiK01915.
    OMAiHIAAYGD.

    Family and domain databases

    Gene3Di3.10.20.70. 1 hit.
    3.30.590.10. 1 hit.
    InterProiIPR008147. Gln_synt_beta.
    IPR014746. Gln_synth/guanido_kin_cat_dom.
    IPR008146. Gln_synth_cat_dom.
    IPR027303. Gln_synth_gly_rich_site.
    IPR027302. Gln_synth_N_conserv_site.
    [Graphical view]
    PfamiPF00120. Gln-synt_C. 1 hit.
    PF03951. Gln-synt_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF54368. SSF54368. 1 hit.
    PROSITEiPS00180. GLNA_1. 1 hit.
    PS00181. GLNA_ATP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4W8D0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSSLLTDLV NLDLSESTDK VIAEYIWVGG TGMDVRSKAR TLSGPVDDPS    50
    KLPKWNFDGS STGQATGDDS EVILHPQAIF RDPFRKGKNI LVMCDCYAPN 100
    GEPIPTNNRY NAARIFSHPD VKAEEPWYGI EQEYTLLQKH INWPLGWPLG 150
    GYPGPQGPYY CAAGADKSYG RDIVDAHYKA CLFAGINISG INAEVMPGQW 200
    EFQIGPVVGV SAGDHVWVAR YILERITEIA GVVVSFDPKP IPGDWNGAGA 250
    HTNYSTKSMR SNGGYEVIKK AIKKLGMRHR EHIAAYGDGN ERRLTGRHET 300
    ADINNFVWGV ANRGASVRVG RDTEKDGKGY FEDRRPASNM DPYLVTAMIA 350
    ETTILWEPSH GHGHGQSNGK 370
    Length:370
    Mass (Da):40,678
    Last modified:July 5, 2005 - v1
    Checksum:i5A0B525D2F78CD23
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB180689 mRNA. Translation: BAD99301.1.
    AC082645 Genomic DNA. Translation: AAK18848.1.
    RefSeqiNP_001051067.1. NM_001057602.1.
    UniGeneiOs.48875.

    Genome annotation databases

    EnsemblPlantsiOS03T0712800-02; OS03T0712800-02; OS03G0712800.
    GeneIDi4333896.
    KEGGiosa:4333896.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB180689 mRNA. Translation: BAD99301.1 .
    AC082645 Genomic DNA. Translation: AAK18848.1 .
    RefSeqi NP_001051067.1. NM_001057602.1.
    UniGenei Os.48875.

    3D structure databases

    ProteinModelPortali Q4W8D0.
    SMRi Q4W8D0. Positions 6-357.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi Q4W8D0.
    PRIDEi Q4W8D0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0712800-02 ; OS03T0712800-02 ; OS03G0712800 .
    GeneIDi 4333896.
    KEGGi osa:4333896.

    Organism-specific databases

    Gramenei Q4W8D0.

    Phylogenomic databases

    eggNOGi COG0174.
    HOGENOMi HOG000061500.
    KOi K01915.
    OMAi HIAAYGD.

    Family and domain databases

    Gene3Di 3.10.20.70. 1 hit.
    3.30.590.10. 1 hit.
    InterProi IPR008147. Gln_synt_beta.
    IPR014746. Gln_synth/guanido_kin_cat_dom.
    IPR008146. Gln_synth_cat_dom.
    IPR027303. Gln_synth_gly_rich_site.
    IPR027302. Gln_synth_N_conserv_site.
    [Graphical view ]
    Pfami PF00120. Gln-synt_C. 1 hit.
    PF03951. Gln-synt_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54368. SSF54368. 1 hit.
    PROSITEi PS00180. GLNA_1. 1 hit.
    PS00181. GLNA_ATP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1."
      Tabuchi M., Sugiyama K., Ishiyama K., Inoue E., Sato T., Takahashi H., Yamaya T.
      Plant J. 42:641-651(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
      Strain: cv. Sasanishiki.
      Tissue: Flower.
    2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiGLN13_ORYSJ
    AccessioniPrimary (citable) accession number: Q4W8D0
    Secondary accession number(s): Q9AUQ3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 13, 2006
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3