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Q4W8D0 (GLN13_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Glutamine synthetase cytosolic isozyme 1-3

EC=6.3.1.2
Alternative name(s):
Glutamate--ammonia ligase GLN1;3
Short name=OsGLN1;3
OsGS1;3
Gene names
Name:GLN1-3
Ordered Locus Names:Os03g0712800, LOC_Os03g50490
ORF Names:OSJNBb0033N16.19
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length370 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + L-glutamate + NH3 = ADP + phosphate + L-glutamine.

Subunit structure

Homooctamer By similarity.

Subcellular location

Cytoplasm.

Tissue specificity

Expressed at low levels in spikelets (rice flower). Ref.1

Sequence similarities

Belongs to the glutamine synthetase family.

Ontologies

Keywords
   Biological processNitrogen fixation
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionLigase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processglutamine biosynthetic process

Inferred from electronic annotation. Source: InterPro

nitrogen fixation

Inferred from electronic annotation. Source: UniProtKB-KW

response to cadmium ion

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

cytosolic ribosome

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

plasma membrane

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

copper ion binding

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

glutamate-ammonia ligase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 370370Glutamine synthetase cytosolic isozyme 1-3
PRO_0000239822

Sequences

Sequence LengthMass (Da)Tools
Q4W8D0 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 5A0B525D2F78CD23

FASTA37040,678
        10         20         30         40         50         60 
MSSSLLTDLV NLDLSESTDK VIAEYIWVGG TGMDVRSKAR TLSGPVDDPS KLPKWNFDGS 

        70         80         90        100        110        120 
STGQATGDDS EVILHPQAIF RDPFRKGKNI LVMCDCYAPN GEPIPTNNRY NAARIFSHPD 

       130        140        150        160        170        180 
VKAEEPWYGI EQEYTLLQKH INWPLGWPLG GYPGPQGPYY CAAGADKSYG RDIVDAHYKA 

       190        200        210        220        230        240 
CLFAGINISG INAEVMPGQW EFQIGPVVGV SAGDHVWVAR YILERITEIA GVVVSFDPKP 

       250        260        270        280        290        300 
IPGDWNGAGA HTNYSTKSMR SNGGYEVIKK AIKKLGMRHR EHIAAYGDGN ERRLTGRHET 

       310        320        330        340        350        360 
ADINNFVWGV ANRGASVRVG RDTEKDGKGY FEDRRPASNM DPYLVTAMIA ETTILWEPSH 

       370 
GHGHGQSNGK 

« Hide

References

« Hide 'large scale' references
[1]"Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1."
Tabuchi M., Sugiyama K., Ishiyama K., Inoue E., Sato T., Takahashi H., Yamaya T.
Plant J. 42:641-651(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY.
Strain: cv. Sasanishiki.
Tissue: Flower.
[2]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB180689 mRNA. Translation: BAD99301.1.
AC082645 Genomic DNA. Translation: AAK18848.1.
RefSeqNP_001051067.1. NM_001057602.1.
UniGeneOs.48875.

3D structure databases

ProteinModelPortalQ4W8D0.
SMRQ4W8D0. Positions 6-357.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbQ4W8D0.
PRIDEQ4W8D0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS03T0712800-02; OS03T0712800-02; OS03G0712800.
GeneID4333896.
KEGGosa:4333896.

Organism-specific databases

GrameneQ4W8D0.

Phylogenomic databases

eggNOGCOG0174.
HOGENOMHOG000061500.
KOK01915.
OMAHIAAYGD.

Family and domain databases

Gene3D3.10.20.70. 1 hit.
3.30.590.10. 1 hit.
InterProIPR008147. Gln_synt_beta.
IPR014746. Gln_synth/guanido_kin_cat_dom.
IPR008146. Gln_synth_cat_dom.
IPR027303. Gln_synth_gly_rich_site.
IPR027302. Gln_synth_N_conserv_site.
[Graphical view]
PfamPF00120. Gln-synt_C. 1 hit.
PF03951. Gln-synt_N. 1 hit.
[Graphical view]
SUPFAMSSF54368. SSF54368. 1 hit.
PROSITEPS00180. GLNA_1. 1 hit.
PS00181. GLNA_ATP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameGLN13_ORYSJ
AccessionPrimary (citable) accession number: Q4W8D0
Secondary accession number(s): Q9AUQ3
Entry history
Integrated into UniProtKB/Swiss-Prot: June 13, 2006
Last sequence update: July 5, 2005
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations