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Protein
Submitted name:

Polyadenylate-binding protein 1-like

Gene

PABPC1L

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Polyadenylate-binding protein 1-likeImported
Gene namesi
Name:PABPC1LImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 20

Organism-specific databases

HGNCiHGNC:15797. PABPC1L.

PTM / Processingi

Proteomic databases

PaxDbiQ4VXT6.
PeptideAtlasiQ4VXT6.

Expressioni

Gene expression databases

BgeeiQ4VXT6.
ExpressionAtlasiQ4VXT6. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000217073.

Structurei

3D structure databases

ProteinModelPortaliQ4VXT6.
SMRiQ4VXT6. Positions 81-147.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini82 – 14968PABCInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains PABC domain.SAAS annotation

Phylogenomic databases

eggNOGiKOG0123. Eukaryota.
ENOG410XR5X. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000136546.
HOVERGENiHBG093144.

Family and domain databases

Gene3Di1.10.1900.10. 1 hit.
InterProiIPR002004. PABP_HYD.
[Graphical view]
PfamiPF00658. PABP. 1 hit.
[Graphical view]
SMARTiSM00517. PolyA. 1 hit.
[Graphical view]
SUPFAMiSSF63570. SSF63570. 1 hit.
PROSITEiPS51309. PABC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4VXT6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRPPVVPRR PPAHISSVRQ ASTQVPRTVP HTQRVANIGT QTTGPSGVGC
60 70 80 90 100
CTPGRPLLPC KCSSAAHSTY RVQEPAVHIP GQEPLTASML AAAPLHEQKQ
110 120 130 140
MIGERLYPLI HDVHTQLAGK ITGMLLEIDN SELLLMLESP ESLHAKISA
Length:149
Mass (Da):16,012
Last modified:July 5, 2005 - v1
Checksum:iE867CFA43BE0DDA1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL008725 Genomic DNA. No translation available.
AL109839 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000372819; ENSP00000361906; ENSG00000101104.
UCSCiuc061xgm.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL008725 Genomic DNA. No translation available.
AL109839 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliQ4VXT6.
SMRiQ4VXT6. Positions 81-147.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000217073.

Proteomic databases

PaxDbiQ4VXT6.
PeptideAtlasiQ4VXT6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000372819; ENSP00000361906; ENSG00000101104.
UCSCiuc061xgm.1. human.

Organism-specific databases

HGNCiHGNC:15797. PABPC1L.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0123. Eukaryota.
ENOG410XR5X. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000136546.
HOVERGENiHBG093144.

Miscellaneous databases

ChiTaRSiPABPC1L. human.

Gene expression databases

BgeeiQ4VXT6.
ExpressionAtlasiQ4VXT6. baseline and differential.

Family and domain databases

Gene3Di1.10.1900.10. 1 hit.
InterProiIPR002004. PABP_HYD.
[Graphical view]
PfamiPF00658. PABP. 1 hit.
[Graphical view]
SMARTiSM00517. PolyA. 1 hit.
[Graphical view]
SUPFAMiSSF63570. SSF63570. 1 hit.
PROSITEiPS51309. PABC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence and comparative analysis of human chromosome 20."
    Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
    , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
    Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiQ4VXT6_HUMAN
AccessioniPrimary (citable) accession number: Q4VXT6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: July 6, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.