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Q4VJ29 (Q4VJ29_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
LIM homeodomain protein EMBL AAX83055.1
Gene names
Name:lmx1bb ZFIN ZDB-GENE-050114-2
Synonyms:lmx1b.1 ZFIN ZDB-GENE-050114-2
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) EMBL AAX83055.1
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length375 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Nucleus By similarity RuleBase RU000682.

Sequence similarities

Contains 1 homeobox DNA-binding domain. SAAS SAAS001781

Contains 2 LIM zinc-binding domains. RuleBase RU000350 SAAS SAAS001781

Sequences

Sequence LengthMass (Da)Tools
Q4VJ29 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 1DC86C615345584E

FASTA37542,489
        10         20         30         40         50         60 
MLDGIKIEDH PLRSGQATLG VMLGTECHHQ AVCEGCQRPI SDRFLMRVNE SSWHEECLQC 

        70         80         90        100        110        120 
AVCQQPLTTS CYFRERKLYC KYDYQQLFAT KCSGCLEKIA PTEFVMRALE CVYHLNCFCC 

       130        140        150        160        170        180 
CVCDRQLRKG DEFVLKDGQL LCKSDYEREK DLLGSVSPDD SDSEKSEDEE LDIKPEKGSG 

       190        200        210        220        230        240 
GTGKGDDGKD PRRPKRPRTI LTTQQRRAFK ASFEVSSKPC RKVRETLAAE TGLSVRVVQV 

       250        260        270        280        290        300 
WFQNQRAKMK KLARRQQQQQ EQQNSQRLGQ EVMSNRMEGM MNSYTQLAPA QQQMVALENG 

       310        320        330        340        350        360 
YSTDPFQQGL TPPQMPGDHM NPYGNDSIFH DIDSDTSLTS LSDCFMASSD AGSMQARVGN 

       370 
PIDRLYSMQS SYFAS

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References

[1]"Zebrafish Lmx1b.1 and Lmx1b.2 are required for maintenance of the isthmic organizer."
O'Hara F.P., Beck E., Barr L.K., Wong L.L., Kessler D.S., Riddle R.D.
Development 132:3163-3173(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY894989 mRNA. Translation: AAX83055.1.
IPIIPI00631669.
RefSeqNP_001020338.2. NM_001025167.2.
UniGeneDr.108678.

3D structure databases

ProteinModelPortalQ4VJ29.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID554360.
KEGGdre:554360.

Organism-specific databases

CTD554360.
ZFINZDB-GENE-050114-2. lmx1bb.

Phylogenomic databases

HOVERGENHBG052335.
InParanoidQ4VJ29.
KOK09371.

Family and domain databases

Gene3D1.10.10.60. 1 hit.
2.10.110.10. 2 hits.
InterProIPR017970. Homeobox_CS.
IPR001356. Homeodomain.
IPR009057. Homeodomain-like.
IPR001781. Znf_LIM.
[Graphical view]
PfamPF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
[Graphical view]
SMARTSM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
[Graphical view]
SUPFAMSSF46689. Homeodomain_like. 1 hit.
PROSITEPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 2 hits.
PS50023. LIM_DOMAIN_2. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio20880753.

Entry information

Entry nameQ4VJ29_DANRE
AccessionPrimary (citable) accession number: Q4VJ29
Entry history
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: April 3, 2013
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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