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Protein

Mediator of RNA polymerase II transcription subunit 24

Gene

Med24

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).By similarity

GO - Molecular functioni

  • histone acetyltransferase activity Source: RGD
  • receptor activity Source: Ensembl
  • RNA polymerase II transcription cofactor activity Source: Ensembl
  • transcription coactivator activity Source: RGD

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiR-RNO-212436. Generic Transcription Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Mediator of RNA polymerase II transcription subunit 24
Alternative name(s):
Mediator complex subunit 24
Thyroid hormone receptor-associated protein 4
Gene namesi
Name:Med24
Synonyms:Thrap4
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1564565. Med24.

Subcellular locationi

GO - Cellular componenti

  • mediator complex Source: Ensembl
  • nucleus Source: RGD
  • ubiquitin ligase complex Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 987987Mediator of RNA polymerase II transcription subunit 24PRO_0000305913Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei860 – 8601PhosphoserineCombined sources
Modified residuei871 – 8711PhosphoserineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ4V8B3.
PRIDEiQ4V8B3.

PTM databases

PhosphoSiteiQ4V8B3.

Expressioni

Gene expression databases

GenevisibleiQ4V8B3. RN.

Interactioni

Subunit structurei

Component of the Mediator complex, which is composed of MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The MED12, MED13, CCNC and CDK8 subunits form a distinct module termed the CDK8 module. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Interacts with AR (By similarity).By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011947.

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi128 – 1325LXXLL motif 1
Motifi344 – 3485LXXLL motif 2
Motifi446 – 4505LXXLL motif 3
Motifi555 – 5595LXXLL motif 4
Motifi786 – 7905LXXLL motif 5
Motifi855 – 8595LXXLL motif 6

Sequence similaritiesi

Belongs to the Mediator complex subunit 24 family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IF72. Eukaryota.
ENOG410YPDT. LUCA.
GeneTreeiENSGT00390000016438.
HOGENOMiHOG000293419.
HOVERGENiHBG055588.
InParanoidiQ4V8B3.
KOiK15167.
OMAiAVMHLDI.
OrthoDBiEOG7DRJ29.

Family and domain databases

InterProiIPR021429. Mediator_Med24_N.
[Graphical view]
PfamiPF11277. Med24_N. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4V8B3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVVNLKQAI LQAWKERWSD YQWAINMKKF FPKGATWDIL NLAEALLEQA
60 70 80 90 100
MIGPSPNPLI LSYLKYAISS QMVSYSSVLT AISKFDDFSR DLCVQALLDI
110 120 130 140 150
MDMFCDRLSC HGKAEECIGL CRALLSALHW LLRCTAASAE RLQEGLEAGS
160 170 180 190 200
AVTGEKQLAL CLQCLEKTLS STKNRALLHI AKLEEASSWT AIEHCLLKLG
210 220 230 240 250
EILANLSNPQ LRSQAEHCGT LIRSIPTMLS VHSEQLHKTG FPTIHALILL
260 270 280 290 300
EGTMNLTGEM QPLVEQLMMV KRMQHIPTPL FVLEIWKACF VGLIESPEGT
310 320 330 340 350
QELKWTAFTY LKIPQVLVKL KKYFHGDKDF TEDVNCAFEF LLKLTPLLDK
360 370 380 390 400
ADQRCNCDCT NFLLQECNKQ GLLSEASFAS LVSKRTADRD PQLKSSENAN
410 420 430 440 450
IQPNPGLILR AEPTVTNILK TMDADHSKSP EGLLGVLGHM LSGKSLDLLL
460 470 480 490 500
AAAAATGKLK SFARKFINLN EFTTHGSGES TKTASVRALL FDISFLMLCH
510 520 530 540 550
VAQTYGSEVI LSESSSGEEV PFFETWMQTC MPEEGKILNP DHPCFRPDST
560 570 580 590 600
KVESLVALLN NSSEMKLVQM KWHEACLSIS AAILEILNAW ENGVLAFESI
610 620 630 640 650
QKITDNIKGK VCSLAVCAVA WLVAHVRMLG LDEREKSLQM IRQLAGPLYS
660 670 680 690 700
ENTLQFYNER VVIMNSILEH MCADVLQQTA TQIKFPSTGV DTMPYWNLLP
710 720 730 740 750
PKRPIKEVLT DIFAKVLEKG WVDSRSIHIL DTLLHMGGVY WFCNNLIKEL
760 770 780 790 800
LKETRKEHTL RAVQLLYSIF CLDMQQVTLV LLGHILPGLL TDSSKWHSLM
810 820 830 840 850
DPPGTALAKL AVWCALSSYS SHKGQASSRQ KKRHREDIED YISLFPVEDM
860 870 880 890 900
QPSKLMRLLS SNEDDASILS SPTDRSMNSS LSASQLHTVN MRDPLNRVLA
910 920 930 940 950
NLFLLISSVL GSRTAGPHTQ FVQWFMEECV DCLEQDSRGS ILQFMPFTTV
960 970 980
SELVKVSAMS SPKVVLAITD LSLPLGRQVA AKAIAAL
Length:987
Mass (Da):110,081
Last modified:July 5, 2005 - v1
Checksum:i0456BD64D5245E56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097461 mRNA. Translation: AAH97461.1.
RefSeqiNP_001029251.1. NM_001034079.1.
UniGeneiRn.7360.

Genome annotation databases

EnsembliENSRNOT00000011947; ENSRNOP00000011947; ENSRNOG00000008711.
GeneIDi619436.
KEGGirno:619436.
UCSCiRGD:1564565. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097461 mRNA. Translation: AAH97461.1.
RefSeqiNP_001029251.1. NM_001034079.1.
UniGeneiRn.7360.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011947.

PTM databases

PhosphoSiteiQ4V8B3.

Proteomic databases

PaxDbiQ4V8B3.
PRIDEiQ4V8B3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000011947; ENSRNOP00000011947; ENSRNOG00000008711.
GeneIDi619436.
KEGGirno:619436.
UCSCiRGD:1564565. rat.

Organism-specific databases

CTDi9862.
RGDi1564565. Med24.

Phylogenomic databases

eggNOGiENOG410IF72. Eukaryota.
ENOG410YPDT. LUCA.
GeneTreeiENSGT00390000016438.
HOGENOMiHOG000293419.
HOVERGENiHBG055588.
InParanoidiQ4V8B3.
KOiK15167.
OMAiAVMHLDI.
OrthoDBiEOG7DRJ29.

Enzyme and pathway databases

ReactomeiR-RNO-212436. Generic Transcription Pathway.

Miscellaneous databases

NextBioi714632.
PROiQ4V8B3.

Gene expression databases

GenevisibleiQ4V8B3. RN.

Family and domain databases

InterProiIPR021429. Mediator_Med24_N.
[Graphical view]
PfamiPF11277. Med24_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  2. "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues."
    Lundby A., Secher A., Lage K., Nordsborg N.B., Dmytriyev A., Lundby C., Olsen J.V.
    Nat. Commun. 3:876-876(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-860 AND SER-871, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiMED24_RAT
AccessioniPrimary (citable) accession number: Q4V8B3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: July 5, 2005
Last modified: May 11, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.