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Q4V889

- Q4V889_RAT

UniProt

Q4V889 - Q4V889_RAT

Protein
Submitted name:

Protein LOC100910646

Gene

Rnf12

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 92 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein LOC100910646Imported
    Submitted name:
    Ring finger protein 12Imported
    Submitted name:
    Ring finger protein 12, isoform CRA_bImported
    Gene namesi
    Name:Rnf12Imported
    Synonyms:LOC100910646Imported, RlimImported
    ORF Names:rCG_38103Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome X

    Organism-specific databases

    RGDi6497321. LOC100910646.
    1559832. Rlim.

    Expressioni

    Gene expression databases

    GenevestigatoriQ4V889.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000003782.

    Family & Domainsi

    Keywords - Domaini

    Zinc-fingerUniRule annotation

    Phylogenomic databases

    eggNOGiCOG5540.
    GeneTreeiENSGT00730000110459.
    HOGENOMiHOG000273881.
    HOVERGENiHBG009886.
    InParanoidiQ4V889.
    KOiK16271.
    OMAiDNLAMRN.
    OrthoDBiEOG7Z69CK.
    TreeFamiTF325756.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    InterProiIPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]
    PfamiPF13639. zf-RING_2. 1 hit.
    [Graphical view]
    SMARTiSM00184. RING. 1 hit.
    [Graphical view]
    PROSITEiPS50089. ZF_RING_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4V889-1 [UniParc]FASTAAdd to Basket

    « Hide

    MENSDSNDKG SDQSAAQRRS QMDRLDREEA FYQFVNNLSE EDYRLMRDNN    50
    LLGTPGESTE EELLRRLQQI KEGPPPQSSD ENRAGESSDD VSNSDSIIDW 100
    LNSVRQSGNT TRSGQRGNQS WRAVSRTNPN SGDFRFSLEI NVNRNNGSQT 150
    SENENEPSTR RLSVESMESS SQRQMESHAS ESTSARPSRA ERNSTEALEV 200
    PLTRGQRRAR SRSPEHRRTR ARAERSRSPL HPTIEIPRRA HHNISPQTLE 250
    QPLENEPEGS SRTRHHVTLR QQISGPELLG RGLFAASGSR NPSQGTSSSD 300
    TGSNSESSGS GQRPPTIVLD LQVRRVRPGE YRQRDSIASR TRSRSQTPNN 350
    TVTYESERGG FRRTFSRSER AGVRTYVSTI RIPIRRILNT GLSETTSVAI 400
    QTMLRQIMTG FGELSYFMYS DSDSEPSASV SSRNTERAES RNGRGSSGAG 450
    NSSASSSSPS PSSNGESSES SSDLFEGTSE GGPSGPSRRD GRHRAPVAFD 500
    ESGSLPFLSL AQFFLLNEDD EDQPRGLTKE QIDNLAMRSF GENDALKTCS 550
    VCITEYTEGN KLRKLPCSHE YHVHCIDRWL SENSTCPICR RAVLSSGNRE 600
    SVV 603
    Length:603
    Mass (Da):66,968
    Last modified:July 5, 2005 - v1
    Checksum:iF421C4FCC5278427
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06105538 Genomic DNA. No translation available.
    AABR06105590 Genomic DNA. No translation available.
    BC097491 mRNA. Translation: AAH97491.1.
    CH473969 Genomic DNA. Translation: EDM07169.1.
    RefSeqiNP_001020063.1. NM_001024892.1.
    XP_003752129.1. XM_003752081.2.
    XP_006257203.1. XM_006257141.1.
    XP_006257211.1. XM_006257149.1.
    UniGeneiRn.85539.

    Genome annotation databases

    EnsembliENSRNOT00000003782; ENSRNOP00000003782; ENSRNOG00000002824.
    ENSRNOT00000067009; ENSRNOP00000059093; ENSRNOG00000045695.
    GeneIDi100910646.
    317241.
    KEGGirno:100910646.
    rno:317241.
    UCSCiRGD:1559832. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06105538 Genomic DNA. No translation available.
    AABR06105590 Genomic DNA. No translation available.
    BC097491 mRNA. Translation: AAH97491.1 .
    CH473969 Genomic DNA. Translation: EDM07169.1 .
    RefSeqi NP_001020063.1. NM_001024892.1.
    XP_003752129.1. XM_003752081.2.
    XP_006257203.1. XM_006257141.1.
    XP_006257211.1. XM_006257149.1.
    UniGenei Rn.85539.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000003782.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000003782 ; ENSRNOP00000003782 ; ENSRNOG00000002824 .
    ENSRNOT00000067009 ; ENSRNOP00000059093 ; ENSRNOG00000045695 .
    GeneIDi 100910646.
    317241.
    KEGGi rno:100910646.
    rno:317241.
    UCSCi RGD:1559832. rat.

    Organism-specific databases

    CTDi 51132.
    RGDi 6497321. LOC100910646.
    1559832. Rlim.

    Phylogenomic databases

    eggNOGi COG5540.
    GeneTreei ENSGT00730000110459.
    HOGENOMi HOG000273881.
    HOVERGENi HBG009886.
    InParanoidi Q4V889.
    KOi K16271.
    OMAi DNLAMRN.
    OrthoDBi EOG7Z69CK.
    TreeFami TF325756.

    Miscellaneous databases

    NextBioi 671483.
    PROi Q4V889.

    Gene expression databases

    Genevestigatori Q4V889.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    InterProi IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    Pfami PF13639. zf-RING_2. 1 hit.
    [Graphical view ]
    SMARTi SM00184. RING. 1 hit.
    [Graphical view ]
    PROSITEi PS50089. ZF_RING_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: PlacentaImported.
    2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    5. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.
    6. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiQ4V889_RAT
    AccessioniPrimary (citable) accession number: Q4V889
    Secondary accession number(s): D4A8S6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2005
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 92 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3