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Q4V889

- Q4V889_RAT

UniProt

Q4V889 - Q4V889_RAT

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Protein
Submitted name: Protein LOC100910646
Gene
Rlim, LOC100910646, Rnf12, rCG_38103
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein LOC100910646Imported
Submitted name:
Ring finger protein 12Imported
Submitted name:
Ring finger protein 12, isoform CRA_bImported
Gene namesi
Name:RlimImported
Synonyms:LOC100910646Imported, Rnf12Imported
ORF Names:rCG_38103Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome X

Organism-specific databases

RGDi6497321. LOC100910646.
1559832. Rlim.

Expressioni

Gene expression databases

GenevestigatoriQ4V889.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003782.

Family & Domainsi

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiCOG5540.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000273881.
HOVERGENiHBG009886.
InParanoidiQ4V889.
KOiK16271.
OMAiDNLAMRN.
OrthoDBiEOG7Z69CK.
TreeFamiTF325756.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4V889-1 [UniParc]FASTAAdd to Basket

« Hide

MENSDSNDKG SDQSAAQRRS QMDRLDREEA FYQFVNNLSE EDYRLMRDNN    50
LLGTPGESTE EELLRRLQQI KEGPPPQSSD ENRAGESSDD VSNSDSIIDW 100
LNSVRQSGNT TRSGQRGNQS WRAVSRTNPN SGDFRFSLEI NVNRNNGSQT 150
SENENEPSTR RLSVESMESS SQRQMESHAS ESTSARPSRA ERNSTEALEV 200
PLTRGQRRAR SRSPEHRRTR ARAERSRSPL HPTIEIPRRA HHNISPQTLE 250
QPLENEPEGS SRTRHHVTLR QQISGPELLG RGLFAASGSR NPSQGTSSSD 300
TGSNSESSGS GQRPPTIVLD LQVRRVRPGE YRQRDSIASR TRSRSQTPNN 350
TVTYESERGG FRRTFSRSER AGVRTYVSTI RIPIRRILNT GLSETTSVAI 400
QTMLRQIMTG FGELSYFMYS DSDSEPSASV SSRNTERAES RNGRGSSGAG 450
NSSASSSSPS PSSNGESSES SSDLFEGTSE GGPSGPSRRD GRHRAPVAFD 500
ESGSLPFLSL AQFFLLNEDD EDQPRGLTKE QIDNLAMRSF GENDALKTCS 550
VCITEYTEGN KLRKLPCSHE YHVHCIDRWL SENSTCPICR RAVLSSGNRE 600
SVV 603
Length:603
Mass (Da):66,968
Last modified:July 5, 2005 - v1
Checksum:iF421C4FCC5278427
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06105538 Genomic DNA. No translation available.
AABR06105590 Genomic DNA. No translation available.
BC097491 mRNA. Translation: AAH97491.1.
CH473969 Genomic DNA. Translation: EDM07169.1.
RefSeqiNP_001020063.1. NM_001024892.1.
XP_003752129.1. XM_003752081.2.
XP_006257203.1. XM_006257141.1.
XP_006257211.1. XM_006257149.1.
UniGeneiRn.85539.

Genome annotation databases

EnsembliENSRNOT00000003782; ENSRNOP00000003782; ENSRNOG00000002824.
ENSRNOT00000067009; ENSRNOP00000059093; ENSRNOG00000045695.
GeneIDi100910646.
317241.
KEGGirno:100910646.
rno:317241.
UCSCiRGD:1559832. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06105538 Genomic DNA. No translation available.
AABR06105590 Genomic DNA. No translation available.
BC097491 mRNA. Translation: AAH97491.1 .
CH473969 Genomic DNA. Translation: EDM07169.1 .
RefSeqi NP_001020063.1. NM_001024892.1.
XP_003752129.1. XM_003752081.2.
XP_006257203.1. XM_006257141.1.
XP_006257211.1. XM_006257149.1.
UniGenei Rn.85539.

3D structure databases

ModBasei Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000003782.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000003782 ; ENSRNOP00000003782 ; ENSRNOG00000002824 .
ENSRNOT00000067009 ; ENSRNOP00000059093 ; ENSRNOG00000045695 .
GeneIDi 100910646.
317241.
KEGGi rno:100910646.
rno:317241.
UCSCi RGD:1559832. rat.

Organism-specific databases

CTDi 51132.
RGDi 6497321. LOC100910646.
1559832. Rlim.

Phylogenomic databases

eggNOGi COG5540.
GeneTreei ENSGT00730000110459.
HOGENOMi HOG000273881.
HOVERGENi HBG009886.
InParanoidi Q4V889.
KOi K16271.
OMAi DNLAMRN.
OrthoDBi EOG7Z69CK.
TreeFami TF325756.

Miscellaneous databases

NextBioi 671483.
PROi Q4V889.

Gene expression databases

Genevestigatori Q4V889.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
InterProi IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
Pfami PF13639. zf-RING_2. 1 hit.
[Graphical view ]
SMARTi SM00184. RING. 1 hit.
[Graphical view ]
PROSITEi PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PlacentaImported.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  5. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  6. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiQ4V889_RAT
AccessioniPrimary (citable) accession number: Q4V889
Secondary accession number(s): D4A8S6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: September 3, 2014
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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