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Protein
Submitted name:

Protein LOC100910646

Gene

Rnf12

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein LOC100910646Imported
Submitted name:
Ring finger protein 12Imported
Submitted name:
Ring finger protein 12, isoform CRA_bImported
Gene namesi
Name:Rnf12Imported
Synonyms:LOC100910646Imported, RlimImported
ORF Names:rCG_38103Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome X

Organism-specific databases

RGDi6497321. LOC100910646.
1559832. Rlim.

Expressioni

Gene expression databases

GenevestigatoriQ4V889.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003782.

Family & Domainsi

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiCOG5540.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000273881.
HOVERGENiHBG009886.
KOiK16271.
OMAiDNLAMRN.
OrthoDBiEOG7Z69CK.
TreeFamiTF325756.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4V889-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENSDSNDKG SDQSAAQRRS QMDRLDREEA FYQFVNNLSE EDYRLMRDNN
60 70 80 90 100
LLGTPGESTE EELLRRLQQI KEGPPPQSSD ENRAGESSDD VSNSDSIIDW
110 120 130 140 150
LNSVRQSGNT TRSGQRGNQS WRAVSRTNPN SGDFRFSLEI NVNRNNGSQT
160 170 180 190 200
SENENEPSTR RLSVESMESS SQRQMESHAS ESTSARPSRA ERNSTEALEV
210 220 230 240 250
PLTRGQRRAR SRSPEHRRTR ARAERSRSPL HPTIEIPRRA HHNISPQTLE
260 270 280 290 300
QPLENEPEGS SRTRHHVTLR QQISGPELLG RGLFAASGSR NPSQGTSSSD
310 320 330 340 350
TGSNSESSGS GQRPPTIVLD LQVRRVRPGE YRQRDSIASR TRSRSQTPNN
360 370 380 390 400
TVTYESERGG FRRTFSRSER AGVRTYVSTI RIPIRRILNT GLSETTSVAI
410 420 430 440 450
QTMLRQIMTG FGELSYFMYS DSDSEPSASV SSRNTERAES RNGRGSSGAG
460 470 480 490 500
NSSASSSSPS PSSNGESSES SSDLFEGTSE GGPSGPSRRD GRHRAPVAFD
510 520 530 540 550
ESGSLPFLSL AQFFLLNEDD EDQPRGLTKE QIDNLAMRSF GENDALKTCS
560 570 580 590 600
VCITEYTEGN KLRKLPCSHE YHVHCIDRWL SENSTCPICR RAVLSSGNRE

SVV
Length:603
Mass (Da):66,968
Last modified:July 5, 2005 - v1
Checksum:iF421C4FCC5278427
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06105538 Genomic DNA. No translation available.
AABR06105590 Genomic DNA. No translation available.
BC097491 mRNA. Translation: AAH97491.1.
CH473969 Genomic DNA. Translation: EDM07169.1.
RefSeqiNP_001020063.1. NM_001024892.1.
XP_003752129.1. XM_003752081.3.
XP_006257203.1. XM_006257141.2.
XP_006257211.1. XM_006257149.2.
UniGeneiRn.85539.

Genome annotation databases

EnsembliENSRNOT00000003782; ENSRNOP00000003782; ENSRNOG00000002824.
ENSRNOT00000067009; ENSRNOP00000059093; ENSRNOG00000045695.
GeneIDi100910646.
317241.
KEGGirno:100910646.
rno:317241.
UCSCiRGD:1559832. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06105538 Genomic DNA. No translation available.
AABR06105590 Genomic DNA. No translation available.
BC097491 mRNA. Translation: AAH97491.1.
CH473969 Genomic DNA. Translation: EDM07169.1.
RefSeqiNP_001020063.1. NM_001024892.1.
XP_003752129.1. XM_003752081.3.
XP_006257203.1. XM_006257141.2.
XP_006257211.1. XM_006257149.2.
UniGeneiRn.85539.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003782.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000003782; ENSRNOP00000003782; ENSRNOG00000002824.
ENSRNOT00000067009; ENSRNOP00000059093; ENSRNOG00000045695.
GeneIDi100910646.
317241.
KEGGirno:100910646.
rno:317241.
UCSCiRGD:1559832. rat.

Organism-specific databases

CTDi51132.
RGDi6497321. LOC100910646.
1559832. Rlim.

Phylogenomic databases

eggNOGiCOG5540.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000273881.
HOVERGENiHBG009886.
KOiK16271.
OMAiDNLAMRN.
OrthoDBiEOG7Z69CK.
TreeFamiTF325756.

Miscellaneous databases

NextBioi35573424.
PROiQ4V889.

Gene expression databases

GenevestigatoriQ4V889.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PlacentaImported.
  2. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  5. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.
  6. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiQ4V889_RAT
AccessioniPrimary (citable) accession number: Q4V889
Secondary accession number(s): D4A8S6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: March 4, 2015
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.