Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Ring finger protein 12

Gene

Rlim

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-983168. Antigen processing: Ubiquitination & Proteasome degradation.

Names & Taxonomyi

Protein namesi
Submitted name:
Ring finger protein 12Imported
Submitted name:
Ring finger protein 12, isoform CRA_bImported
Submitted name:
Ring finger protein, LIM domain-interactingImported
Gene namesi
Name:RlimImported
Synonyms:LOC100910646Imported, NEWGENE_1559832Imported, Rnf12Imported
ORF Names:rCG_38103Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi11393862. NEWGENE_1559832.
1559832. Rlim.

Expressioni

Gene expression databases

BgeeiENSRNOG00000002824.
ExpressionAtlasiQ4V889. baseline.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000059093.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini549 – 590RING-typeInterPro annotationAdd BLAST42

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0800. Eukaryota.
ENOG41121N2. LUCA.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000273881.
HOVERGENiHBG009886.
KOiK16271.
OMAiMRNFGES.
OrthoDBiEOG091G0B6K.
TreeFamiTF325756.

Family and domain databases

CDDicd00162. RING. 1 hit.
Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
PfamiView protein in Pfam
PF13639. zf-RING_2. 1 hit.
SMARTiView protein in SMART
SM00184. RING. 1 hit.
PROSITEiView protein in PROSITE
PS50089. ZF_RING_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4V889-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENSDSNDKG SDQSAAQRRS QMDRLDREEA FYQFVNNLSE EDYRLMRDNN
60 70 80 90 100
LLGTPGESTE EELLRRLQQI KEGPPPQSSD ENRAGESSDD VSNSDSIIDW
110 120 130 140 150
LNSVRQSGNT TRSGQRGNQS WRAVSRTNPN SGDFRFSLEI NVNRNNGSQT
160 170 180 190 200
SENENEPSTR RLSVESMESS SQRQMESHAS ESTSARPSRA ERNSTEALEV
210 220 230 240 250
PLTRGQRRAR SRSPEHRRTR ARAERSRSPL HPTIEIPRRA HHNISPQTLE
260 270 280 290 300
QPLENEPEGS SRTRHHVTLR QQISGPELLG RGLFAASGSR NPSQGTSSSD
310 320 330 340 350
TGSNSESSGS GQRPPTIVLD LQVRRVRPGE YRQRDSIASR TRSRSQTPNN
360 370 380 390 400
TVTYESERGG FRRTFSRSER AGVRTYVSTI RIPIRRILNT GLSETTSVAI
410 420 430 440 450
QTMLRQIMTG FGELSYFMYS DSDSEPSASV SSRNTERAES RNGRGSSGAG
460 470 480 490 500
NSSASSSSPS PSSNGESSES SSDLFEGTSE GGPSGPSRRD GRHRAPVAFD
510 520 530 540 550
ESGSLPFLSL AQFFLLNEDD EDQPRGLTKE QIDNLAMRSF GENDALKTCS
560 570 580 590 600
VCITEYTEGN KLRKLPCSHE YHVHCIDRWL SENSTCPICR RAVLSSGNRE

SVV
Length:603
Mass (Da):66,968
Last modified:July 5, 2005 - v1
Checksum:iF421C4FCC5278427
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07039328 Genomic DNA. No translation available.
AABR07039377 Genomic DNA. No translation available.
BC097491 mRNA. Translation: AAH97491.1.
CH473969 Genomic DNA. Translation: EDM07169.1.
RefSeqiNP_001020063.1. NM_001024892.1.
XP_006257203.1. XM_006257141.3.
XP_006257211.1. XM_006257149.3.
XP_017457539.1. XM_017602050.1.
XP_017457540.1. XM_017602051.1.
XP_017457541.1. XM_017602052.1.
XP_017457825.1. XM_017602336.1.
XP_017457826.1. XM_017602337.1.
XP_017457827.1. XM_017602338.1.
XP_017457828.1. XM_017602339.1.
UniGeneiRn.85539.

Genome annotation databases

EnsembliENSRNOT00000003782; ENSRNOP00000003782; ENSRNOG00000002824.
ENSRNOT00000067009; ENSRNOP00000059093; ENSRNOG00000045695.
ENSRNOT00000091325; ENSRNOP00000072115; ENSRNOG00000002824.
GeneIDi108348168.
317241.
KEGGirno:108348168.
rno:317241.
UCSCiRGD:1559832. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ4V889_RAT
AccessioniPrimary (citable) accession number: Q4V889
Secondary accession number(s): D4A8S6
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: July 5, 2017
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported