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Protein

Zinc transporter ZIP6

Gene

Slc39a6

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May act as a zinc-influx transporter.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processIon transport, Transport, Zinc transport
LigandZinc

Enzyme and pathway databases

ReactomeiR-RNO-442380 Zinc influx into cells by the SLC39 gene family

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc transporter ZIP6
Alternative name(s):
Solute carrier family 39 member 6
Zrt- and Irt-like protein 6
Short name:
ZIP-6
Gene namesi
Name:Slc39a6Imported
Synonyms:Zip6
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1304664 Slc39a6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini21 – 311ExtracellularSequence analysisAdd BLAST291
Transmembranei312 – 332Helical; Name=1Sequence analysisAdd BLAST21
Topological domaini333 – 341CytoplasmicSequence analysis9
Transmembranei342 – 362Helical; Name=2Sequence analysisAdd BLAST21
Topological domaini363 – 409ExtracellularSequence analysisAdd BLAST47
Transmembranei410 – 430Helical; Name=3Sequence analysisAdd BLAST21
Topological domaini431 – 643CytoplasmicSequence analysisAdd BLAST213
Transmembranei644 – 664Helical; Name=4Sequence analysisAdd BLAST21
Topological domaini665 – 672ExtracellularSequence analysis8
Transmembranei673 – 693Helical; Name=5Sequence analysisAdd BLAST21
Topological domaini694 – 710CytoplasmicSequence analysisAdd BLAST17
Transmembranei711 – 731Helical; Name=6Sequence analysisAdd BLAST21
Topological domaini732 – 741ExtracellularSequence analysis10

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000027812721 – 741Zinc transporter ZIP6Add BLAST721

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi68N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi142N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi226N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi251N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi268N-linked (GlcNAc...) asparagineSequence analysis1
Modified residuei457PhosphoserineBy similarity1
Modified residuei464PhosphoserineCombined sources1
Glycosylationi670N-linked (GlcNAc...) asparagineSequence analysis1

Post-translational modificationi

N-glycosylated.By similarity

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiQ4V887
PRIDEiQ4V887

PTM databases

iPTMnetiQ4V887
PhosphoSitePlusiQ4V887

Expressioni

Gene expression databases

BgeeiENSRNOG00000028703
GenevisibleiQ4V887 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034256

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili450 – 475Sequence analysisAdd BLAST26

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi92 – 117His-richSequence analysisAdd BLAST26
Compositional biasi434 – 439Poly-LysSequence analysis6
Compositional biasi499 – 502Poly-GluSequence analysis4
Compositional biasi527 – 564His-richSequence analysisAdd BLAST38

Sequence similaritiesi

Belongs to the ZIP transporter (TC 2.A.5) family. [View classification]Sequence analysis

Keywords - Domaini

Coiled coil, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2693 Eukaryota
COG0428 LUCA
GeneTreeiENSGT00760000119115
HOGENOMiHOG000013093
HOVERGENiHBG055748
InParanoidiQ4V887
KOiK14712
OMAiEFNYLCP
OrthoDBiEOG091G02WM
PhylomeDBiQ4V887
TreeFamiTF318470

Family and domain databases

InterProiView protein in InterPro
IPR003689 ZIP
PfamiView protein in Pfam
PF02535 Zip, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q4V887-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATNLSVIMI LTFALWVTNP LHELQSTAAF SQTTEKINSN WESGINVDVA
60 70 80 90 100
VTMQRHHLQQ LFYRYGENDS LSVEGFRKLL QNIGIDKIKR VHIHHDHERH
110 120 130 140 150
SDHERHSDHE RHSHRGHAAA GKNSRKAFCP DLDSDNSGKN PNTSQGKGSR
160 170 180 190 200
PAEHVNGRRN GKESASSSEV TSAVYNTVSE GTHFLETIET PKPGRRTKDI
210 220 230 240 250
NPSTPPSITE KSRVGRLSRL ARRKGNDSVS EPRKSFMYSR TSNDNIQECF
260 270 280 290 300
NATKLLTSHG MSVQALLNAT EFNYLCPAII NQIDARSCLI HTASEKKAEI
310 320 330 340 350
PPKTYSLQIA WLGGFIAISI ISFLSLLGVI LVPLMNRVFF KFLLSFLVAL
360 370 380 390 400
AVGTLSGDAL LHLLPHSHAS HHHSHSHEEP AMEMKRGPLF SHLSAQNLEE
410 420 430 440 450
SSYFDSTWKG LTALGGLYFM FLVEHVLTLI KQFKDKKKKN QKKPENDEDV
460 470 480 490 500
ESKKQLSKYE SQLSTNEEKV DTGERPESYL QADSQEPSPF DSQQPTLLEE
510 520 530 540 550
EEVMIAHAHP QEVYNEYVPR GCKNKCHSHF HDTLGQSDDL IHHHHDYHHI
560 570 580 590 600
LHHHHHQNHH PHSHSQRYSR EELKDAGIAT LAWMVIMGDG LHNFSDGLAI
610 620 630 640 650
GAAFTEGLSS GLSTSVAVFC HELPHELGDF AVLLKAGMTV KQAVLYNALS
660 670 680 690 700
AMLAYLGMAT GIFIGHYAEN VSMWIFALTA GLFMYVALVD MVPEMLHNDA
710 720 730 740
SDHGCSRWGY FFLQNAGILL GFGIMLLISI FEHKIVFRIN F
Length:741
Mass (Da):83,231
Last modified:July 5, 2005 - v1
Checksum:i1110AB62B640D500
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097493 mRNA Translation: AAH97493.1
RefSeqiNP_001019916.1, NM_001024745.1
UniGeneiRn.99415

Genome annotation databases

EnsembliENSRNOT00000036306; ENSRNOP00000034256; ENSRNOG00000028703
ENSRNOT00000079381; ENSRNOP00000075595; ENSRNOG00000028703
GeneIDi291733
KEGGirno:291733
UCSCiRGD:1304664 rat

Similar proteinsi

Entry informationi

Entry nameiS39A6_RAT
AccessioniPrimary (citable) accession number: Q4V887
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 20, 2007
Last sequence update: July 5, 2005
Last modified: May 23, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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