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Protein

Transcription factor CP2

Gene

tfcp2

Organism
Xenopus laevis (African clawed frog)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May function as a transcription factor.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor CP2
Gene namesi
Name:tfcp2
OrganismiXenopus laevis (African clawed frog)
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-865546. tfcp2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002280041 – 506Transcription factor CP2Add BLAST506

Interactioni

Subunit structurei

Component of the SSP (stage selector protein) complex, which appears to be a heteromer of TFCP2 and 2 copies of NFE4.By similarity

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni133 – 395DNA-bindingBy similarityAdd BLAST263

Sequence similaritiesi

Belongs to the grh/CP2 family. CP2 subfamily.Curated

Phylogenomic databases

HOVERGENiHBG053805.
KOiK09275.

Family and domain databases

InterProiIPR007604. CP2.
IPR013761. SAM/pointed.
[Graphical view]
PfamiPF04516. CP2. 1 hit.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4V860-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAWALKLPLA DEVIESGLVQ DFDASLSGIG QELGAGAYSM SDVLALPIFK
60 70 80 90 100
QEESSLPSEN ENKILPFQYV LCTATSPAVK LHEETLTYLN QGQSYEIRML
110 120 130 140 150
DNRKIGELPE LNGKLVKSIF RVVFHDRRLQ YTEHQQLEGW RWNRPGDRIL
160 170 180 190 200
DIDIPMSVGI IDPRANPTQL NTIEFLWDPA KRTSVFIQVH CISTEFTMRK
210 220 230 240 250
HGGEKGVPFR VQIDTFKENE NGEYTEHLHS ASSQIKVFKP KGADRKQKTD
260 270 280 290 300
REKMEKRTPQ EKEKYQPSYE TTILTECSPW PEITYVSNSP SPGFNSSHNS
310 320 330 340 350
FPIGEGNGSP NHQPEPPAPI VDVSAGLTPI QNLMPTSTPQ EAQQWLHRNR
360 370 380 390 400
FAAFSRLFTN FSGADLLKLT REDVIQICGP ADGIRLFNAL KGRIVRPRLT
410 420 430 440 450
IYVCQESQQL REQQQHKHEN GEPGNGAFYV YHAIYLEEMT TIELTEKIAQ
460 470 480 490 500
LFSISPHQIN QIYKQGPTGI HVLISDEMIQ NFQDESCFIL DTMKAETNDS

YHIILK
Length:506
Mass (Da):57,542
Last modified:July 5, 2005 - v1
Checksum:iA56E8A46FD2F3A5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097529 mRNA. Translation: AAH97529.1.
RefSeqiNP_001089447.1. NM_001095978.1.
UniGeneiXl.53896.

Genome annotation databases

GeneIDi734497.
KEGGixla:734497.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC097529 mRNA. Translation: AAH97529.1.
RefSeqiNP_001089447.1. NM_001095978.1.
UniGeneiXl.53896.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi734497.
KEGGixla:734497.

Organism-specific databases

CTDi7024.
XenbaseiXB-GENE-865546. tfcp2.

Phylogenomic databases

HOVERGENiHBG053805.
KOiK09275.

Family and domain databases

InterProiIPR007604. CP2.
IPR013761. SAM/pointed.
[Graphical view]
PfamiPF04516. CP2. 1 hit.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiTFCP2_XENLA
AccessioniPrimary (citable) accession number: Q4V860
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 21, 2006
Last sequence update: July 5, 2005
Last modified: January 7, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.