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Protein

Protein rogdi homolog

Gene

Rogdi

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein rogdi homolog
Gene namesi
Name:Rogdi
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1560021 Rogdi

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell junction, Cell membrane, Cell projection, Cytoplasmic vesicle, Membrane, Nucleus, Synapse

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00003156672 – 287Protein rogdi homologAdd BLAST286

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ4V7D2
PRIDEiQ4V7D2

Expressioni

Tissue specificityi

Detected at synapses in the stratum lucidum in the hippocampus CA3 region (at protein level).1 Publication

Gene expression databases

BgeeiENSRNOG00000003125
GenevisibleiQ4V7D2 RN

Interactioni

Subunit structurei

Monomer.By similarity

Structurei

3D structure databases

SMRiQ4V7D2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the rogdi family.Curated

Phylogenomic databases

eggNOGiKOG3992 Eukaryota
ENOG410Y6JZ LUCA
GeneTreeiENSGT00390000007164
HOGENOMiHOG000008516
HOVERGENiHBG087014
InParanoidiQ4V7D2
OMAiCVFSQYK
OrthoDBiEOG091G0GOX
PhylomeDBiQ4V7D2
TreeFamiTF105859

Family and domain databases

InterProiView protein in InterPro
IPR028241 RAVE2/Rogdi
PANTHERiPTHR13618 PTHR13618, 1 hit
PfamiView protein in Pfam
PF10259 Rogdi_lz, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q4V7D2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAMAASAA ERAVLEEEFR WLLHAEVHAV LRQLQDILKE ASLRFTLPGP
60 70 80 90 100
STEGPAKQEN FILGSCGTDQ VKGVLTLQGD ALSQADVNLK MPRNNQLLHF
110 120 130 140 150
AFREDKQWKL QQIQDARNHV SQAIYLLANR DESYQFKTGA EVLKLMDAVM
160 170 180 190 200
LQLTRARNRL TTPATLTLPE IAASGLTRMF APTLPSDLLV NVYINLNKLC
210 220 230 240 250
LTVYQLHTLQ PTSTKNFRPA GGAVLHSPGA MFEWGSQRLE VSHVHKVECV
260 270 280
IPWLNDALVY FTVSLQLCQQ LKDKISVFSS YWSSRPF
Length:287
Mass (Da):32,205
Last modified:July 5, 2005 - v1
Checksum:i175D990636AE4394
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098001 mRNA Translation: AAH98001.1
RefSeqiNP_001020035.1, NM_001024864.1
UniGeneiRn.995

Genome annotation databases

EnsembliENSRNOT00000004176; ENSRNOP00000004176; ENSRNOG00000003125
GeneIDi287061
KEGGirno:287061
UCSCiRGD:1560021 rat

Similar proteinsi

Entry informationi

Entry nameiROGDI_RAT
AccessioniPrimary (citable) accession number: Q4V7D2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2005
Last modified: May 23, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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