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Protein

RING finger protein 44

Gene

Rnf44

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri298 – 33942RING-type; atypicalPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
RING finger protein 44
Gene namesi
Name:Rnf44
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1307212. Rnf44.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 350350RING finger protein 44PRO_0000273415Add
BLAST

Proteomic databases

PaxDbiQ4V7B8.

PTM databases

PhosphoSiteiQ4V7B8.

Expressioni

Gene expression databases

ExpressionAtlasiQ4V7B8. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000057548.

Structurei

3D structure databases

ProteinModelPortaliQ4V7B8.
SMRiQ4V7B8. Positions 280-342.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi67 – 239173Pro-richAdd
BLAST

Sequence similaritiesi

Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri298 – 33942RING-type; atypicalPROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG0800. Eukaryota.
ENOG41121N2. LUCA.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000231638.
HOVERGENiHBG059283.
InParanoidiQ4V7B8.
KOiK19041.
OMAiPLPTGQH.
OrthoDBiEOG74TWZV.
PhylomeDBiQ4V7B8.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4V7B8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLHPATQQSP FMVDLHDQVH QGPVPLSYTV TTVTTQGFPL PASQHIPGCS
60 70 80 90 100
AQQLPACSVM FSGQHYPLCC LPPPLIQACT MQQLPVPYHT YPHLISSDHY
110 120 130 140 150
ILHPPPPAPP PQPTHMAPLG QFVSLQTQHP RMPLQRLDNE MDLRGDQHPL
160 170 180 190 200
GSFTYSTSAT GPTLSPSVPL HYLPHDPLHQ ELSFGVPYSH MMPRRLSTQR
210 220 230 240 250
YRLQQPLPPP PPPPPPSYYP SFLPYFLSML PMSPTTVGPT ISLDLDVDDV
260 270 280 290 300
EMENYEALLN LAERLGDAKP RGLTKADIEQ LPSYRFNPDS HQSEQTLCVV
310 320 330 340 350
CFSDFEVRQL LRVLPCNHEF HAKCVDKWLK ANRTCPICRA DASEVPREAE
Length:350
Mass (Da):39,228
Last modified:July 5, 2005 - v1
Checksum:i2CDA9AECA2DDA352
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098030 mRNA. Translation: AAH98030.1.
RefSeqiNP_001019966.1. NM_001024795.1.
UniGeneiRn.21345.

Genome annotation databases

EnsembliENSRNOT00000060822; ENSRNOP00000057548; ENSRNOG00000017641.
GeneIDi361212.
KEGGirno:361212.
UCSCiRGD:1307212. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC098030 mRNA. Translation: AAH98030.1.
RefSeqiNP_001019966.1. NM_001024795.1.
UniGeneiRn.21345.

3D structure databases

ProteinModelPortaliQ4V7B8.
SMRiQ4V7B8. Positions 280-342.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000057548.

PTM databases

PhosphoSiteiQ4V7B8.

Proteomic databases

PaxDbiQ4V7B8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000060822; ENSRNOP00000057548; ENSRNOG00000017641.
GeneIDi361212.
KEGGirno:361212.
UCSCiRGD:1307212. rat.

Organism-specific databases

CTDi22838.
RGDi1307212. Rnf44.

Phylogenomic databases

eggNOGiKOG0800. Eukaryota.
ENOG41121N2. LUCA.
GeneTreeiENSGT00730000110459.
HOGENOMiHOG000231638.
HOVERGENiHBG059283.
InParanoidiQ4V7B8.
KOiK19041.
OMAiPLPTGQH.
OrthoDBiEOG74TWZV.
PhylomeDBiQ4V7B8.

Miscellaneous databases

PROiQ4V7B8.

Gene expression databases

ExpressionAtlasiQ4V7B8. baseline and differential.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.

Entry informationi

Entry nameiRNF44_RAT
AccessioniPrimary (citable) accession number: Q4V7B8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: July 5, 2005
Last modified: July 6, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.