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Q4V0E2

- GLGB1_XANC8

UniProt

Q4V0E2 - GLGB1_XANC8

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Protein

1,4-alpha-glucan branching enzyme GlgB 1

Gene

glgB1

Organism
Xanthomonas campestris pv. campestris (strain 8004)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei403 – 4031NucleophileUniRule annotation
Active sitei456 – 4561Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciXCAM314565:GCQG-140-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB 1UniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1UniRule annotation
Alpha-(1->4)-glucan branching enzyme 1UniRule annotation
Glycogen branching enzyme 1UniRule annotation
Short name:
BE 1UniRule annotation
Gene namesi
Name:glgB1UniRule annotation
Ordered Locus Names:XC_0143
OrganismiXanthomonas campestris pv. campestris (strain 8004)
Taxonomic identifieri314565 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000000420: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7247241,4-alpha-glucan branching enzyme GlgB 1PRO_0000260714Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi314565.XC_0143.

Structurei

3D structure databases

ProteinModelPortaliQ4V0E2.
SMRiQ4V0E2. Positions 112-723.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4V0E2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTNRWDPGVT RALAEARHGD AFAVLGAHPS TNGRLLRTYH PGAEHVTAVL
60 70 80 90 100
ADGREVPLEA GPEPGLFAGE LPAEGRYRLR IGWPGGTQDT ADPYAFGPLL
110 120 130 140 150
SDFDLHLISE GHHLQLADAL GANAVEVDGV RGTRFAVWAP NASRVAVVGD
160 170 180 190 200
FNSWDARRHP MRLRHQAGVW ELFVPDVGPG AHYKYQLRGP HGHELPAKAD
210 220 230 240 250
PVARRAELAP GTASIVADPT PHQWSDDGWM ATRARRQAHD APMSIYEIHA
260 270 280 290 300
GSWLREEGLD LDWDGLADRL IPYVADMGFT HVELMPVTEH PFGGSWGYQP
310 320 330 340 350
LGLFAPTARF GSPDGFARFV DRCHREGIGV IVDWVPAHFP TDAHGLAHFD
360 370 380 390 400
GTALYEHADP REGFHRDWNT LIYNHGRREV SGFLIASALE FLQRYHVDGL
410 420 430 440 450
RVDAVASMLY RDYSRNAGEW VPNIHGGREN YETIAFLRRL NEVVREHAPG
460 470 480 490 500
AVTIAEESTA WPGVTADVSH GGLGFHYKWN MGWMHDTLHY IGLDPIYRRY
510 520 530 540 550
HHGELTFSMV YAYSERFVLP ISHDEVVHGK GSLLGRMPGD DWQRFANLRA
560 570 580 590 600
YLGFMFTHPG RKLLFMGCEF GQPTEWNHDA GLPWHLLDDA RHRGVQTLVR
610 620 630 640 650
DLNHLYAQYP ALHAHDDDPS GFAWLVGDDA ANSVVAFLRK GKRGDAPVLV
660 670 680 690 700
VINYTPVVQQ GYRLGVPQGG LWREVFNSDA GIYGGANLGN GGAVTAEPQS
710 720
MHGHAQSLPL LLPPLGVIVL APQG
Length:724
Mass (Da):80,088
Last modified:July 5, 2005 - v1
Checksum:i9927812712B93C4F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000050 Genomic DNA. Translation: AAY47231.1.
RefSeqiYP_241251.2. NC_007086.1.

Genome annotation databases

EnsemblBacteriaiAAY47231; AAY47231; XC_0143.
GeneIDi3380030.
KEGGixcb:XC_0143.
PATRICi24061476. VBIXanCam24967_0150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000050 Genomic DNA. Translation: AAY47231.1 .
RefSeqi YP_241251.2. NC_007086.1.

3D structure databases

ProteinModelPortali Q4V0E2.
SMRi Q4V0E2. Positions 112-723.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 314565.XC_0143.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY47231 ; AAY47231 ; XC_0143 .
GeneIDi 3380030.
KEGGi xcb:XC_0143.
PATRICi 24061476. VBIXanCam24967_0150.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci XCAM314565:GCQG-140-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
    Qian W., Jia Y., Ren S.-X., He Y.-Q., Feng J.-X., Lu L.-F., Sun Q., Ying G., Tang D.-J., Tang H., Wu W., Hao P., Wang L., Jiang B.-L., Zeng S., Gu W.-Y., Lu G., Rong L.
    , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.-P., Tang J.-L., He C.
    Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8004.

Entry informationi

Entry nameiGLGB1_XANC8
AccessioniPrimary (citable) accession number: Q4V0E2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 5, 2005
Last modified: October 1, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3