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Q4USH4

- Q4USH4_XANC8

UniProt

Q4USH4 - Q4USH4_XANC8

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Protein
Submitted name: DNA ligase
Gene
XC_2951
Organism
Xanthomonas campestris pv. campestris (strain 8004)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXCAM314565:GCQG-2964-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:XC_2951Imported
OrganismiXanthomonas campestris pv. campestris (strain 8004)Imported
Taxonomic identifieri314565 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000000420: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi314565.XC_2951.

Structurei

3D structure databases

ProteinModelPortaliQ4USH4.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4USH4-1 [UniParc]FASTAAdd to Basket

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MKRFAALYRT LDRSTGTLDK RAALVAYFRA APPLDAAWAL YLLAGGKVAS    50
ARMRIAASGE LREWIAEAAG IADWLVADSY DHVGDLAETL ALLLDDPASE 100
AVDVSLAEWI EQRLLPIANQ DVAVRKHCIV QAWRTLAFDE RLVFNKLLTG 150
ALRVGVSQRL VQQALAELSG VDIARIAQRM LGSWRPHATY VADLLTHEAL 200
PGDRQQPYPF FLASPLEADV ESLGAIDDWL LEWKWDGIRL QLLRRAGEAA 250
LWSRGEERLD GRFPEIEQAA MGLPDGTVID GELLAWQPEQ LLPMPFTALQ 300
TRIQRLKPGP KTLAAAPARV VAYDLLELDG EDLRERPLHA RRALLERVLA 350
TLADPRIIAS PLVHSTDWQA AAQVRLDARA RGVEGLMLKR ARSPYQSGRR 400
RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HDGALVPIAK 450
AYSGLDDTEI LQLDRWIRAN TTERFGPVRA VTPHHVFELG FEGVNRSTRH 500
KSGIAVRFPR ILRWRHDKPF AEADHLSSLQ ALAR 534
Length:534
Mass (Da):59,840
Last modified:July 5, 2005 - v1
Checksum:i07F364B3409005AC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000050 Genomic DNA. Translation: AAY49999.1.
RefSeqiYP_244019.1. NC_007086.1.

Genome annotation databases

EnsemblBacteriaiAAY49999; AAY49999; XC_2951.
GeneIDi3378569.
KEGGixcb:XC_2951.
PATRICi24067501. VBIXanCam24967_3129.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000050 Genomic DNA. Translation: AAY49999.1 .
RefSeqi YP_244019.1. NC_007086.1.

3D structure databases

ProteinModelPortali Q4USH4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 314565.XC_2951.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY49999 ; AAY49999 ; XC_2951 .
GeneIDi 3378569.
KEGGi xcb:XC_2951.
PATRICi 24067501. VBIXanCam24967_3129.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci XCAM314565:GCQG-2964-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
    Qian W., Jia Y., Ren S.X., He Y.Q., Feng J.X., Lu L.F., Sun Q., Ying G., Tang D.J., Tang H., Wu W., Hao P., Wang L., Jiang B.L., Zeng S., Gu W.Y., Lu G., Rong L.
    , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.P., Tang J.L., He C.
    Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 8004Imported.

Entry informationi

Entry nameiQ4USH4_XANC8
AccessioniPrimary (citable) accession number: Q4USH4
Entry historyi
Integrated into UniProtKB/TrEMBL: July 5, 2005
Last sequence update: July 5, 2005
Last modified: May 14, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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