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Q4USH4

- Q4USH4_XANC8

UniProt

Q4USH4 - Q4USH4_XANC8

Protein
Submitted name:

DNA ligase

Gene

XC_2951

Organism
Xanthomonas campestris pv. campestris (strain 8004)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 53 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciXCAM314565:GCQG-2964-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:XC_2951Imported
    OrganismiXanthomonas campestris pv. campestris (strain 8004)Imported
    Taxonomic identifieri314565 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000000420: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi314565.XC_2951.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4USH4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4USH4-1 [UniParc]FASTAAdd to Basket

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    MKRFAALYRT LDRSTGTLDK RAALVAYFRA APPLDAAWAL YLLAGGKVAS    50
    ARMRIAASGE LREWIAEAAG IADWLVADSY DHVGDLAETL ALLLDDPASE 100
    AVDVSLAEWI EQRLLPIANQ DVAVRKHCIV QAWRTLAFDE RLVFNKLLTG 150
    ALRVGVSQRL VQQALAELSG VDIARIAQRM LGSWRPHATY VADLLTHEAL 200
    PGDRQQPYPF FLASPLEADV ESLGAIDDWL LEWKWDGIRL QLLRRAGEAA 250
    LWSRGEERLD GRFPEIEQAA MGLPDGTVID GELLAWQPEQ LLPMPFTALQ 300
    TRIQRLKPGP KTLAAAPARV VAYDLLELDG EDLRERPLHA RRALLERVLA 350
    TLADPRIIAS PLVHSTDWQA AAQVRLDARA RGVEGLMLKR ARSPYQSGRR 400
    RGDWWKWKID PLTIDAVLLY AQAGHGRRST LYTDYTFGLW HDGALVPIAK 450
    AYSGLDDTEI LQLDRWIRAN TTERFGPVRA VTPHHVFELG FEGVNRSTRH 500
    KSGIAVRFPR ILRWRHDKPF AEADHLSSLQ ALAR 534
    Length:534
    Mass (Da):59,840
    Last modified:July 5, 2005 - v1
    Checksum:i07F364B3409005AC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000050 Genomic DNA. Translation: AAY49999.1.
    RefSeqiYP_244019.1. NC_007086.1.

    Genome annotation databases

    EnsemblBacteriaiAAY49999; AAY49999; XC_2951.
    GeneIDi3378569.
    KEGGixcb:XC_2951.
    PATRICi24067501. VBIXanCam24967_3129.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000050 Genomic DNA. Translation: AAY49999.1 .
    RefSeqi YP_244019.1. NC_007086.1.

    3D structure databases

    ProteinModelPortali Q4USH4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 314565.XC_2951.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY49999 ; AAY49999 ; XC_2951 .
    GeneIDi 3378569.
    KEGGi xcb:XC_2951.
    PATRICi 24067501. VBIXanCam24967_3129.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci XCAM314565:GCQG-2964-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris."
      Qian W., Jia Y., Ren S.-X., He Y.-Q., Feng J.-X., Lu L.-F., Sun Q., Ying G., Tang D.-J., Tang H., Wu W., Hao P., Wang L., Jiang B.-L., Zeng S., Gu W.-Y., Lu G., Rong L.
      , Tian Y., Yao Z., Fu G., Chen B., Fang R., Qiang B., Chen Z., Zhao G.-P., Tang J.-L., He C.
      Genome Res. 15:757-767(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 8004Imported.

    Entry informationi

    Entry nameiQ4USH4_XANC8
    AccessioniPrimary (citable) accession number: Q4USH4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 5, 2005
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 53 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3