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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds together with S18 to 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-147-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6UniRule annotation
Gene namesi
Name:rpsFUniRule annotation
Ordered Locus Names:RF_0143
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000008548: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12112130S ribosomal protein S6PRO_0000229573Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi315456.RF_0143.

Structurei

3D structure databases

ProteinModelPortaliQ4UN64.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0360.
HOGENOMiHOG000040439.
KOiK02990.
OrthoDBiEOG6P33DH.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4UN64-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSFYESVFII RQDVSLNDID KIVDDFAKII KDNNGTIVKK EYWGLRTLAY
60 70 80 90 100
KIGNNKKGHY YFLGLDITGN VKEELERKMK LNENIIRFLT IKADSISSEP
110 120
SQILKNQSTE NTPVIDVTIN N
Length:121
Mass (Da):13,946
Last modified:April 4, 2006 - v2
Checksum:i9D43EB913AFF93B0
GO

Sequence cautioni

The sequence AAY60994.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY60994.1. Different initiation.
RefSeqiYP_246159.2. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY60994; AAY60994; RF_0143.
GeneIDi3400644.
KEGGirfe:RF_0143.
PATRICi17890640. VBIRicFel64634_0163.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY60994.1. Different initiation.
RefSeqiYP_246159.2. NC_007109.1.

3D structure databases

ProteinModelPortaliQ4UN64.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi315456.RF_0143.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAY60994; AAY60994; RF_0143.
GeneIDi3400644.
KEGGirfe:RF_0143.
PATRICi17890640. VBIRicFel64634_0163.

Phylogenomic databases

eggNOGiCOG0360.
HOGENOMiHOG000040439.
KOiK02990.
OrthoDBiEOG6P33DH.

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-147-MONOMER.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
    Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
    PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-1525 / URRWXCal2.

Entry informationi

Entry nameiRS6_RICFE
AccessioniPrimary (citable) accession number: Q4UN64
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: April 4, 2006
Last modified: January 7, 2015
This is version 54 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.