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Q4UMS3

- RS3_RICFE

UniProt

Q4UMS3 - RS3_RICFE

Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.UniRule annotation

    GO - Molecular functioni

    1. mRNA binding Source: UniProtKB-HAMAP
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciRFEL315456:GKEK-294-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S3UniRule annotation
    Gene namesi
    Name:rpsCUniRule annotation
    Ordered Locus Names:RF_0284
    OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
    Taxonomic identifieri315456 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
    ProteomesiUP000008548: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. small ribosomal subunit Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 21721730S ribosomal protein S3PRO_0000230724Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.UniRule annotation

    Protein-protein interaction databases

    STRINGi315456.RF_0284.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini40 – 11071KH type-2UniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein S3P family.UniRule annotation
    Contains 1 KH type-2 domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0092.
    HOGENOMiHOG000210610.
    KOiK02982.
    OMAiIARAEWY.
    OrthoDBiEOG6K13X3.

    Family and domain databases

    Gene3Di3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    HAMAPiMF_01309_B. Ribosomal_S3_B.
    InterProiIPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR005704. Ribosomal_S3_bac.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    [Graphical view]
    PfamiPF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view]
    SMARTiSM00322. KH. 1 hit.
    [Graphical view]
    SUPFAMiSSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
    PROSITEiPS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4UMS3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGQKVCAHGF RVGPTLIKGW DSVLYAEKHY KTLFIQDLKI RDLINKGFNQ    50
    AQVSRVLIER PSNKSIIINI NAKKPNIIIG RNGSEIDKIK KAIEKMTSLK 100
    EVYINIHEVR KFNIDAAIVA QTIALQLEKR VSFRKAMKTA IQASFKQGGQ 150
    GIRVSCSGRL GGAEIARTEW YIEGRMPLHT LRADIDYSTA EAITTYGIIG 200
    VKVWIYKGEY TENKRYN 217
    Length:217
    Mass (Da):24,573
    Last modified:July 5, 2005 - v1
    Checksum:i81A53C1E66DABAE7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61135.1.
    RefSeqiWP_011270635.1. NC_007109.1.
    YP_246300.1. NC_007109.1.

    Genome annotation databases

    EnsemblBacteriaiAAY61135; AAY61135; RF_0284.
    GeneIDi3400247.
    KEGGirfe:RF_0284.
    PATRICi17890980. VBIRicFel64634_0327.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61135.1 .
    RefSeqi WP_011270635.1. NC_007109.1.
    YP_246300.1. NC_007109.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 315456.RF_0284.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY61135 ; AAY61135 ; RF_0284 .
    GeneIDi 3400247.
    KEGGi rfe:RF_0284.
    PATRICi 17890980. VBIRicFel64634_0327.

    Phylogenomic databases

    eggNOGi COG0092.
    HOGENOMi HOG000210610.
    KOi K02982.
    OMAi IARAEWY.
    OrthoDBi EOG6K13X3.

    Enzyme and pathway databases

    BioCyci RFEL315456:GKEK-294-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1140.32. 1 hit.
    3.30.300.20. 1 hit.
    HAMAPi MF_01309_B. Ribosomal_S3_B.
    InterProi IPR004087. KH_dom.
    IPR015946. KH_dom-like_a/b.
    IPR004044. KH_dom_type_2.
    IPR009019. KH_prok-type.
    IPR005704. Ribosomal_S3_bac.
    IPR001351. Ribosomal_S3_C.
    IPR018280. Ribosomal_S3_CS.
    [Graphical view ]
    Pfami PF07650. KH_2. 1 hit.
    PF00189. Ribosomal_S3_C. 1 hit.
    [Graphical view ]
    SMARTi SM00322. KH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54814. SSF54814. 1 hit.
    SSF54821. SSF54821. 1 hit.
    TIGRFAMsi TIGR01009. rpsC_bact. 1 hit.
    PROSITEi PS50823. KH_TYPE_2. 1 hit.
    PS00548. RIBOSOMAL_S3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
      Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
      PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-1525 / URRWXCal2.

    Entry informationi

    Entry nameiRS3_RICFE
    AccessioniPrimary (citable) accession number: Q4UMS3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 4, 2006
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Rickettsia felis (Rickettsia azadi)
      Rickettsia felis (strain URRWXCal2): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3