Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q4UMS3

- RS3_RICFE

UniProt

Q4UMS3 - RS3_RICFE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.UniRule annotation

GO - Molecular functioni

  1. mRNA binding Source: UniProtKB-HAMAP
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-294-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S3UniRule annotation
Gene namesi
Name:rpsCUniRule annotation
Ordered Locus Names:RF_0284
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000008548: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21721730S ribosomal protein S3PRO_0000230724Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.UniRule annotation

Protein-protein interaction databases

STRINGi315456.RF_0284.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini40 – 11071KH type-2UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S3P family.UniRule annotation
Contains 1 KH type-2 domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0092.
HOGENOMiHOG000210610.
KOiK02982.
OMAiIARAEWY.
OrthoDBiEOG6K13X3.

Family and domain databases

Gene3Di3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPiMF_01309_B. Ribosomal_S3_B.
InterProiIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamiPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01009. rpsC_bact. 1 hit.
PROSITEiPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4UMS3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGQKVCAHGF RVGPTLIKGW DSVLYAEKHY KTLFIQDLKI RDLINKGFNQ
60 70 80 90 100
AQVSRVLIER PSNKSIIINI NAKKPNIIIG RNGSEIDKIK KAIEKMTSLK
110 120 130 140 150
EVYINIHEVR KFNIDAAIVA QTIALQLEKR VSFRKAMKTA IQASFKQGGQ
160 170 180 190 200
GIRVSCSGRL GGAEIARTEW YIEGRMPLHT LRADIDYSTA EAITTYGIIG
210
VKVWIYKGEY TENKRYN
Length:217
Mass (Da):24,573
Last modified:July 5, 2005 - v1
Checksum:i81A53C1E66DABAE7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61135.1.
RefSeqiYP_246300.1. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY61135; AAY61135; RF_0284.
GeneIDi3400247.
KEGGirfe:RF_0284.
PATRICi17890980. VBIRicFel64634_0327.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61135.1 .
RefSeqi YP_246300.1. NC_007109.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 315456.RF_0284.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY61135 ; AAY61135 ; RF_0284 .
GeneIDi 3400247.
KEGGi rfe:RF_0284.
PATRICi 17890980. VBIRicFel64634_0327.

Phylogenomic databases

eggNOGi COG0092.
HOGENOMi HOG000210610.
KOi K02982.
OMAi IARAEWY.
OrthoDBi EOG6K13X3.

Enzyme and pathway databases

BioCyci RFEL315456:GKEK-294-MONOMER.

Family and domain databases

Gene3Di 3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPi MF_01309_B. Ribosomal_S3_B.
InterProi IPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view ]
Pfami PF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view ]
SMARTi SM00322. KH. 1 hit.
[Graphical view ]
SUPFAMi SSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsi TIGR01009. rpsC_bact. 1 hit.
PROSITEi PS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
    Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
    PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-1525 / URRWXCal2.

Entry informationi

Entry nameiRS3_RICFE
AccessioniPrimary (citable) accession number: Q4UMS3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: July 5, 2005
Last modified: October 29, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3