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Q4UMS3 (RS3_RICFE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
30S ribosomal protein S3
Gene names
Name:rpsC
Ordered Locus Names:RF_0284
OrganismRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) [Complete proteome] [HAMAP]
Taxonomic identifier315456 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group

Protein attributes

Sequence length217 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation By similarity. HAMAP-Rule MF_01309

Subunit structure

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14 By similarity.

Sequence similarities

Belongs to the ribosomal protein S3P family.

Contains 1 KH type-2 domain.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentsmall ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

rRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 21721730S ribosomal protein S3 HAMAP-Rule MF_01309
PRO_0000230724

Regions

Domain40 – 11071KH type-2

Sequences

Sequence LengthMass (Da)Tools
Q4UMS3 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 81A53C1E66DABAE7

FASTA21724,573
        10         20         30         40         50         60 
MGQKVCAHGF RVGPTLIKGW DSVLYAEKHY KTLFIQDLKI RDLINKGFNQ AQVSRVLIER 

        70         80         90        100        110        120 
PSNKSIIINI NAKKPNIIIG RNGSEIDKIK KAIEKMTSLK EVYINIHEVR KFNIDAAIVA 

       130        140        150        160        170        180 
QTIALQLEKR VSFRKAMKTA IQASFKQGGQ GIRVSCSGRL GGAEIARTEW YIEGRMPLHT 

       190        200        210 
LRADIDYSTA EAITTYGIIG VKVWIYKGEY TENKRYN 

« Hide

References

[1]"The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-1525 / URRWXCal2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000053 Genomic DNA. Translation: AAY61135.1.
RefSeqYP_246300.1. NC_007109.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING315456.RF_0284.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY61135; AAY61135; RF_0284.
GeneID3400247.
KEGGrfe:RF_0284.
PATRIC17890980. VBIRicFel64634_0327.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0092.
HOGENOMHOG000210610.
KOK02982.
OMAMGQKTNP.
OrthoDBEOG6K13X3.
ProtClustDBPRK00310.

Enzyme and pathway databases

BioCycRFEL315456:GKEK-294-MONOMER.

Family and domain databases

Gene3D3.30.1140.32. 1 hit.
3.30.300.20. 1 hit.
HAMAPMF_01309_B. Ribosomal_S3_B.
InterProIPR004087. KH_dom.
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR005704. Ribosomal_S3_bac.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
[Graphical view]
PfamPF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
[Graphical view]
SMARTSM00322. KH. 1 hit.
[Graphical view]
SUPFAMSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsTIGR01009. rpsC_bact. 1 hit.
PROSITEPS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS3_RICFE
AccessionPrimary (citable) accession number: Q4UMS3
Entry history
Integrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: July 5, 2005
Last modified: February 19, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia felis (Rickettsia azadi)

Rickettsia felis (strain URRWXCal2): entries and gene names

Ribosomal proteins

Ribosomal proteins families and list of entries