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Protein

Putative polysaccharide polymerase RF_0568

Gene

RF_0568

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-582-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative polysaccharide polymerase RF_0568
Gene namesi
Ordered Locus Names:RF_0568
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000008548 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei15 – 3521HelicalSequence AnalysisAdd
BLAST
Transmembranei71 – 9121HelicalSequence AnalysisAdd
BLAST
Transmembranei100 – 12021HelicalSequence AnalysisAdd
BLAST
Transmembranei129 – 14921HelicalSequence AnalysisAdd
BLAST
Transmembranei166 – 18621HelicalSequence AnalysisAdd
BLAST
Transmembranei203 – 22321HelicalSequence AnalysisAdd
BLAST
Transmembranei229 – 24921HelicalSequence AnalysisAdd
BLAST
Transmembranei272 – 29221HelicalSequence AnalysisAdd
BLAST
Transmembranei324 – 34421HelicalSequence AnalysisAdd
BLAST
Transmembranei379 – 39921HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 407407Putative polysaccharide polymerase RF_0568PRO_0000280991Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi315456.RF_0568.

Family & Domainsi

Sequence similaritiesi

Belongs to the O-antigen polymerase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3307.
HOGENOMiHOG000010752.
OMAiHALMLYI.
OrthoDBiEOG679TJ5.

Sequencei

Sequence statusi: Complete.

Q4UM04-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQYLISSLIF LIPSLGMVAG LSVAATVTIF LLMLFLRGIN RHCERLKGAW
60 70 80 90 100
QSHKAGLLRL LRQNLQFFLA MTIKTELLFT AWCFISCLFA IRPINSLATF
110 120 130 140 150
IQVFILLFLG FTVSNCVPFG NRVQLKNSLI LGILTAILLF FIEYSSHGFL
160 170 180 190 200
TRTFKASFGL YMLDRGCALL SITSWVAIII LLSSGKRRHA LMLYILVLYL
210 220 230 240 250
LSISDSLASF LGFSIGGVIF ILARLIKPIF FKLIAISLIT GSLLFPVIAK
260 270 280 290 300
QIEPRDLSEK YLATQPSAAH RLFIWHFVAN KITLKPILGY GFASSKYIKV
310 320 330 340 350
NNSEMINYNG EKWHPLPLHP HNNILQITLE LGIIGLILFL CLVYKYLKQI
360 370 380 390 400
NNIKSSNFRA ASYSCFINYY IIGMISYNIW QIWWISSGIW VLVLMKLLVK

PDIVVDN
Length:407
Mass (Da):46,181
Last modified:July 5, 2005 - v1
Checksum:i27D1CD8A69ED58A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61419.1.
RefSeqiWP_011270900.1. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY61419; AAY61419; RF_0568.
KEGGirfe:RF_0568.
PATRICi17891687. VBIRicFel64634_0676.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61419.1.
RefSeqiWP_011270900.1. NC_007109.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi315456.RF_0568.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAY61419; AAY61419; RF_0568.
KEGGirfe:RF_0568.
PATRICi17891687. VBIRicFel64634_0676.

Phylogenomic databases

eggNOGiCOG3307.
HOGENOMiHOG000010752.
OMAiHALMLYI.
OrthoDBiEOG679TJ5.

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-582-MONOMER.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
    Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
    PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-1525 / URRWXCal2.

Entry informationi

Entry nameiY568_RICFE
AccessioniPrimary (citable) accession number: Q4UM04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: July 5, 2005
Last modified: July 22, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.