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Q4ULQ3 (RBFA_RICFE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome-binding factor A
Gene names
Name:rbfA
Ordered Locus Names:RF_0669
OrganismRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) [Complete proteome] [HAMAP]
Taxonomic identifier315456 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group

Protein attributes

Sequence length120 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA By similarity. HAMAP-Rule MF_00003

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_00003.

Sequence similarities

Belongs to the RbfA family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 120120Ribosome-binding factor A HAMAP-Rule MF_00003
PRO_0000274888

Sequences

Sequence LengthMass (Da)Tools
Q4ULQ3 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 9D3D60CF8C183D2B

FASTA12013,898
        10         20         30         40         50         60 
MKKLTKTNSH RQQKLASIIN EALIEILRRG KMLDSRLFDC PLTITKVIVT ADLKIANCYF 

        70         80         90        100        110        120 
LPFNTKLTID EIMDALSNSK NAIRNFITNK INMKFSPDIR FHYDHGFDNA IKVEELLKNI 

« Hide

References

[1]"The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-1525 / URRWXCal2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000053 Genomic DNA. Translation: AAY61520.1.
RefSeqYP_246685.1. NC_007109.1.

3D structure databases

ProteinModelPortalQ4ULQ3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING315456.RF_0669.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY61520; AAY61520; RF_0669.
GeneID3401294.
KEGGrfe:RF_0669.
PATRIC17891950. VBIRicFel64634_0804.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0858.
HOGENOMHOG000272967.
KOK02834.
OMATNKINMK.
OrthoDBEOG68Q0RP.
ProtClustDBPRK00521.

Enzyme and pathway databases

BioCycRFEL315456:GKEK-686-MONOMER.

Family and domain databases

Gene3D3.30.300.20. 1 hit.
HAMAPMF_00003. RbfA.
InterProIPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
IPR020053. Ribosome-bd_factorA_CS.
[Graphical view]
PfamPF02033. RBFA. 1 hit.
[Graphical view]
ProDomPD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF89919. SSF89919. 1 hit.
TIGRFAMsTIGR00082. rbfA. 1 hit.
PROSITEPS01319. RBFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRBFA_RICFE
AccessionPrimary (citable) accession number: Q4ULQ3
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: July 5, 2005
Last modified: February 19, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia felis (Rickettsia azadi)

Rickettsia felis (strain URRWXCal2): entries and gene names