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Protein

Protein translocase subunit SecD

Gene

secD

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Translocation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Protein translocase subunit SecDUniRule annotation
Gene namesi
Name:secDUniRule annotation
Ordered Locus Names:RF_0959
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
Proteomesi
  • UP000008548 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei9 – 29HelicalUniRule annotationAdd BLAST21
Transmembranei361 – 381HelicalUniRule annotationAdd BLAST21
Transmembranei384 – 404HelicalUniRule annotationAdd BLAST21
Transmembranei406 – 426HelicalUniRule annotationAdd BLAST21
Transmembranei452 – 474HelicalUniRule annotationAdd BLAST23
Transmembranei486 – 506HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002726351 – 518Protein translocase subunit SecDAdd BLAST518

Interactioni

Subunit structurei

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.UniRule annotation

Protein-protein interaction databases

STRINGi315456.RF_0959.

Structurei

3D structure databases

ProteinModelPortaliQ4UKW3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the SecD/SecF family. SecD subfamily.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107QN8. Bacteria.
COG0342. LUCA.
HOGENOMiHOG000018636.
KOiK03072.
OMAiAAPMEII.
OrthoDBiPOG091H02C5.

Family and domain databases

HAMAPiMF_01463_B. SecD_B. 1 hit.
InterProiIPR001036. Acrflvin-R.
IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
[Graphical view]
PfamiPF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSiPR00702. ACRIFLAVINRP.
TIGRFAMsiTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4UKW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQNLPKWKIF LSIICTVFAV ICALPNFMQV NSKFLPHDSV NLGLDLRGGA
60 70 80 90 100
HLLLDVDFDT YLNDSMENLA DTLRKNFRED KIGYKNLLVR QNSIQLEVRS
110 120 130 140 150
PEELKPLKKI INKIDPEIIA EVNENKIKLS YSESRLNDLL NKVVDQSIEI
160 170 180 190 200
VRMRVDSTGT KEPTLQKQGD KHILLQVPGE ENPSYLKNIL GKTAKLTFHL
210 220 230 240 250
VDENANIEEA VKGHVPVGSM LVKGDSESHR EYYVVIKKKV VLGGDQLTTA
260 270 280 290 300
SASFDQNSQA VVAFSFNNLG SKIFGEITKN NTGKRLAIVL DNKLLSAPTI
310 320 330 340 350
NGAIMGGSGI ITGNFTVESA NELALLLRAG SLPAPLKIIE ERSIGPSLGA
360 370 380 390 400
DSIESGKKAG LIGFIAVCIF MVWSYGVLGL FANIALSLAL LYILALLSLF
410 420 430 440 450
QATLTLPGIA GIILTMGMAV DANVLIYERI KEELHKGVSN LYAIRTGFES
460 470 480 490 500
AFATILDSNL TTLIVAFLLY IFGVGAIKGF AVALTIGIIS SMFSAIIITK
510
LLIDIWVKYF IPKKLGLV
Length:518
Mass (Da):56,608
Last modified:July 5, 2005 - v1
Checksum:i208C69B570F1EDFF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61810.1.
RefSeqiWP_011271282.1. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY61810; AAY61810; RF_0959.
KEGGirfe:RF_0959.
PATRICi17892665. VBIRicFel64634_1150.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61810.1.
RefSeqiWP_011271282.1. NC_007109.1.

3D structure databases

ProteinModelPortaliQ4UKW3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi315456.RF_0959.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAY61810; AAY61810; RF_0959.
KEGGirfe:RF_0959.
PATRICi17892665. VBIRicFel64634_1150.

Phylogenomic databases

eggNOGiENOG4107QN8. Bacteria.
COG0342. LUCA.
HOGENOMiHOG000018636.
KOiK03072.
OMAiAAPMEII.
OrthoDBiPOG091H02C5.

Family and domain databases

HAMAPiMF_01463_B. SecD_B. 1 hit.
InterProiIPR001036. Acrflvin-R.
IPR005791. SecD.
IPR022813. SecD/SecF_arch_bac.
IPR022645. SecD/SecF_bac.
[Graphical view]
PfamiPF02355. SecD_SecF. 1 hit.
[Graphical view]
PRINTSiPR00702. ACRIFLAVINRP.
TIGRFAMsiTIGR00916. 2A0604s01. 1 hit.
TIGR01129. secD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSECD_RICFE
AccessioniPrimary (citable) accession number: Q4UKW3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: July 5, 2005
Last modified: November 2, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.