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Q4UKW3

- SECD_RICFE

UniProt

Q4UKW3 - SECD_RICFE

Protein

Protein translocase subunit SecD

Gene

secD

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.UniRule annotation

    GO - Molecular functioni

    1. P-P-bond-hydrolysis-driven protein transmembrane transporter activity Source: InterPro

    GO - Biological processi

    1. intracellular protein transmembrane transport Source: UniProtKB-HAMAP
    2. protein targeting Source: UniProtKB-HAMAP
    3. protein transport by the Sec complex Source: UniProtKB-HAMAP

    Keywords - Biological processi

    Protein transport, Translocation, Transport

    Enzyme and pathway databases

    BioCyciRFEL315456:GKEK-988-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein translocase subunit SecDUniRule annotation
    Gene namesi
    Name:secDUniRule annotation
    Ordered Locus Names:RF_0959
    OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
    Taxonomic identifieri315456 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
    ProteomesiUP000008548: Chromosome

    Subcellular locationi

    Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. intracellular Source: GOC
    3. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell inner membrane, Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 518518Protein translocase subunit SecDPRO_0000272635Add
    BLAST

    Interactioni

    Subunit structurei

    Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.UniRule annotation

    Protein-protein interaction databases

    STRINGi315456.RF_0959.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4UKW3.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei9 – 2921HelicalUniRule annotationAdd
    BLAST
    Transmembranei361 – 38121HelicalUniRule annotationAdd
    BLAST
    Transmembranei384 – 40421HelicalUniRule annotationAdd
    BLAST
    Transmembranei406 – 42621HelicalUniRule annotationAdd
    BLAST
    Transmembranei452 – 47423HelicalUniRule annotationAdd
    BLAST
    Transmembranei486 – 50621HelicalUniRule annotationAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SecD/SecF family. SecD subfamily.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG0342.
    HOGENOMiHOG000018636.
    KOiK03072.
    OMAiMATVFIE.
    OrthoDBiEOG6N0HJT.

    Family and domain databases

    HAMAPiMF_01463_B. SecD_B.
    InterProiIPR001036. Acrflvin-R.
    IPR005791. SecD.
    IPR022813. SecD/SecF_arch_bac.
    IPR022645. SecD/SecF_bac.
    IPR022646. SecD/SecF_CS.
    [Graphical view]
    PfamiPF07549. Sec_GG. 1 hit.
    PF02355. SecD_SecF. 1 hit.
    [Graphical view]
    PRINTSiPR00702. ACRIFLAVINRP.
    TIGRFAMsiTIGR00916. 2A0604s01. 1 hit.
    TIGR01129. secD. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q4UKW3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQNLPKWKIF LSIICTVFAV ICALPNFMQV NSKFLPHDSV NLGLDLRGGA    50
    HLLLDVDFDT YLNDSMENLA DTLRKNFRED KIGYKNLLVR QNSIQLEVRS 100
    PEELKPLKKI INKIDPEIIA EVNENKIKLS YSESRLNDLL NKVVDQSIEI 150
    VRMRVDSTGT KEPTLQKQGD KHILLQVPGE ENPSYLKNIL GKTAKLTFHL 200
    VDENANIEEA VKGHVPVGSM LVKGDSESHR EYYVVIKKKV VLGGDQLTTA 250
    SASFDQNSQA VVAFSFNNLG SKIFGEITKN NTGKRLAIVL DNKLLSAPTI 300
    NGAIMGGSGI ITGNFTVESA NELALLLRAG SLPAPLKIIE ERSIGPSLGA 350
    DSIESGKKAG LIGFIAVCIF MVWSYGVLGL FANIALSLAL LYILALLSLF 400
    QATLTLPGIA GIILTMGMAV DANVLIYERI KEELHKGVSN LYAIRTGFES 450
    AFATILDSNL TTLIVAFLLY IFGVGAIKGF AVALTIGIIS SMFSAIIITK 500
    LLIDIWVKYF IPKKLGLV 518
    Length:518
    Mass (Da):56,608
    Last modified:July 5, 2005 - v1
    Checksum:i208C69B570F1EDFF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61810.1.
    RefSeqiWP_011271282.1. NC_007109.1.
    YP_246975.1. NC_007109.1.

    Genome annotation databases

    EnsemblBacteriaiAAY61810; AAY61810; RF_0959.
    GeneIDi3400967.
    KEGGirfe:RF_0959.
    PATRICi17892665. VBIRicFel64634_1150.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61810.1 .
    RefSeqi WP_011271282.1. NC_007109.1.
    YP_246975.1. NC_007109.1.

    3D structure databases

    ProteinModelPortali Q4UKW3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 315456.RF_0959.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY61810 ; AAY61810 ; RF_0959 .
    GeneIDi 3400967.
    KEGGi rfe:RF_0959.
    PATRICi 17892665. VBIRicFel64634_1150.

    Phylogenomic databases

    eggNOGi COG0342.
    HOGENOMi HOG000018636.
    KOi K03072.
    OMAi MATVFIE.
    OrthoDBi EOG6N0HJT.

    Enzyme and pathway databases

    BioCyci RFEL315456:GKEK-988-MONOMER.

    Family and domain databases

    HAMAPi MF_01463_B. SecD_B.
    InterProi IPR001036. Acrflvin-R.
    IPR005791. SecD.
    IPR022813. SecD/SecF_arch_bac.
    IPR022645. SecD/SecF_bac.
    IPR022646. SecD/SecF_CS.
    [Graphical view ]
    Pfami PF07549. Sec_GG. 1 hit.
    PF02355. SecD_SecF. 1 hit.
    [Graphical view ]
    PRINTSi PR00702. ACRIFLAVINRP.
    TIGRFAMsi TIGR00916. 2A0604s01. 1 hit.
    TIGR01129. secD. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
      Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
      PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-1525 / URRWXCal2.

    Entry informationi

    Entry nameiSECD_RICFE
    AccessioniPrimary (citable) accession number: Q4UKW3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 23, 2007
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia felis (Rickettsia azadi)
      Rickettsia felis (strain URRWXCal2): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3