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Q4UKD5

- RPOC_RICFE

UniProt

Q4UKD5 - RPOC_RICFE

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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-1178-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:RF_1145
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000008548: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13721372DNA-directed RNA polymerase subunit beta'PRO_0000225573Add
BLAST

Proteomic databases

PRIDEiQ4UKD5.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi315456.RF_1145.

Structurei

3D structure databases

ProteinModelPortaliQ4UKD5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4UKD5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSVVNFYGQL SNTQQFDQIR INIASPDQVR SWSFGEVTKP ETINYRTFKP
60 70 80 90 100
EKDGLFCARI FGPVKDYECL CGKYKRMKNR GITCEKCGVE VTVSRVRRER
110 120 130 140 150
MGHIELAAPV AHIWFLKSLP SRISTLLDMT MRDVEKILYF ENYVVVDPGL
160 170 180 190 200
SILQKGELLT EEELQKAKDK YGEDAFTASI GAEVIQQMLK EIDFLKLKQE
210 220 230 240 250
LYEELQTTSS EVKKKKLVKR LKLVEDFLES ENKPEWMIMD VLPVIPPEIR
260 270 280 290 300
PLVMLDGGRF ATSDLNELYR RVINRNNRLK KLIESKAPDI IVRNEKRMLQ
310 320 330 340 350
EAVDALFDNG RRGRAAKNAN KRPFKSLSDM LKGKQGRFRQ NLLGKRVDYS
360 370 380 390 400
GRSVIVVGSE LKLHQCGLPK KMALELFKPF IYSKLELYGI ATTIKAAKRM
410 420 430 440 450
VEAEKPEVWD VLEEVIREHP VLLNRAPTLH RLGIQAFEPL LIEGKAIQLY
460 470 480 490 500
PLVCAAFNAD FDGDQMAVHI PLSIEAQLEA RVFMMSTNNI LSPANGRPII
510 520 530 540 550
VPDKDIVLGL YYLTLAFDNE VGEGMMFSDL AEMEHALYNK FITIHTKIKY
560 570 580 590 600
RRNQLNAEGK MVPVIIDTTY GRLMVGELLP SNPNIEFKFI NKQLTKKDIS
610 620 630 640 650
LVIDLVYRHC GQKATVIFAD QLMKLGFKYA CSSGISFGMD DMVVPESKST
660 670 680 690 700
HINETQLEIK EFEQQYSNGL ITYGEKYNKV VDAWSRCTDR VANDMMKEIA
710 720 730 740 750
TPPVSDDPNH QKINAIYMMA ISGARGSFQQ IKQLGGMRGL MTKSNGQIIQ
760 770 780 790 800
TPIISNFKEG LTEFECFNSA NGMRKGQIDT ALKTASSGYL TRKLVDVAQD
810 820 830 840 850
CIITEKDCGT DKGIEVKSVI EGGEVIVPLA EKILGRTAAI DIFHPVTNDL
860 870 880 890 900
ILNKGELINE AKLEQIESAG LDRIMIKSVL TCESTTGICS ICYGRDLATG
910 920 930 940 950
TLVSEGEAIG VIAAQSIGEP GTQLTMRTFH IGGAATKGAE VSSVEASYDA
960 970 980 990 1000
KVKIISRNVV INSEERKIVM SRNCELLLLD NNGNEKARHK IPYGARLLVD
1010 1020 1030 1040 1050
DGDMVIKTQK LAEWDPYTIP IITEKSGKVL FKDMVEGISI RDVTDEATGI
1060 1070 1080 1090 1100
PSKVIIESKQ YSRGAELRPR IQLLDAKGEV IALSNGLEAR YYLPVGAVLS
1110 1120 1130 1140 1150
VEDGVQISVG DIIARIPKES TTTKDITGGL PRVAELVEAR RPKDHAVIAE
1160 1170 1180 1190 1200
IDGRVEFGKD YKSKRRIIIH PIDETMSIEY MVPKGKHVVV NEGDFVKKGD
1210 1220 1230 1240 1250
LLIDGNPVLQ DILKVMGVEV LANYIVKEVQ AVYRLQGVKI DDKHIEVIIR
1260 1270 1280 1290 1300
QMLQKVEITD SGGTTLLAGE KIDRHEFEEI NEKAIKNGLK PAEAQLILQG
1310 1320 1330 1340 1350
ITKASLQTRS FISAASFQET TRVLTEAAIA GKIDKLRGLK ENVIVGRLVP
1360 1370
AGTGYFMDKM RKAAVKLDEE NV
Length:1,372
Mass (Da):153,405
Last modified:July 5, 2005 - v1
Checksum:i864E04C0B485E8CB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61996.1.
RefSeqiWP_011271454.1. NC_007109.1.
YP_247161.1. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY61996; AAY61996; RF_1145.
GeneIDi3401442.
KEGGirfe:RF_1145.
PATRICi17893134. VBIRicFel64634_1381.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000053 Genomic DNA. Translation: AAY61996.1 .
RefSeqi WP_011271454.1. NC_007109.1.
YP_247161.1. NC_007109.1.

3D structure databases

ProteinModelPortali Q4UKD5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 315456.RF_1145.

Proteomic databases

PRIDEi Q4UKD5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY61996 ; AAY61996 ; RF_1145 .
GeneIDi 3401442.
KEGGi rfe:RF_1145.
PATRICi 17893134. VBIRicFel64634_1381.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci RFEL315456:GKEK-1178-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
    Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
    PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-1525 / URRWXCal2.

Entry informationi

Entry nameiRPOC_RICFE
AccessioniPrimary (citable) accession number: Q4UKD5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: July 5, 2005
Last modified: October 29, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3