Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q4UKD5

- RPOC_RICFE

UniProt

Q4UKD5 - RPOC_RICFE

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Nucleotidyltransferase, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciRFEL315456:GKEK-1178-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:RF_1145
    OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
    Taxonomic identifieri315456 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
    ProteomesiUP000008548: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymerase

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 13721372DNA-directed RNA polymerase subunit beta'PRO_0000225573Add
    BLAST

    Proteomic databases

    PRIDEiQ4UKD5.

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi315456.RF_1145.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4UKD5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    HOGENOMiHOG000218386.
    KOiK03046.
    OMAiAYDSEFL.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q4UKD5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSVVNFYGQL SNTQQFDQIR INIASPDQVR SWSFGEVTKP ETINYRTFKP     50
    EKDGLFCARI FGPVKDYECL CGKYKRMKNR GITCEKCGVE VTVSRVRRER 100
    MGHIELAAPV AHIWFLKSLP SRISTLLDMT MRDVEKILYF ENYVVVDPGL 150
    SILQKGELLT EEELQKAKDK YGEDAFTASI GAEVIQQMLK EIDFLKLKQE 200
    LYEELQTTSS EVKKKKLVKR LKLVEDFLES ENKPEWMIMD VLPVIPPEIR 250
    PLVMLDGGRF ATSDLNELYR RVINRNNRLK KLIESKAPDI IVRNEKRMLQ 300
    EAVDALFDNG RRGRAAKNAN KRPFKSLSDM LKGKQGRFRQ NLLGKRVDYS 350
    GRSVIVVGSE LKLHQCGLPK KMALELFKPF IYSKLELYGI ATTIKAAKRM 400
    VEAEKPEVWD VLEEVIREHP VLLNRAPTLH RLGIQAFEPL LIEGKAIQLY 450
    PLVCAAFNAD FDGDQMAVHI PLSIEAQLEA RVFMMSTNNI LSPANGRPII 500
    VPDKDIVLGL YYLTLAFDNE VGEGMMFSDL AEMEHALYNK FITIHTKIKY 550
    RRNQLNAEGK MVPVIIDTTY GRLMVGELLP SNPNIEFKFI NKQLTKKDIS 600
    LVIDLVYRHC GQKATVIFAD QLMKLGFKYA CSSGISFGMD DMVVPESKST 650
    HINETQLEIK EFEQQYSNGL ITYGEKYNKV VDAWSRCTDR VANDMMKEIA 700
    TPPVSDDPNH QKINAIYMMA ISGARGSFQQ IKQLGGMRGL MTKSNGQIIQ 750
    TPIISNFKEG LTEFECFNSA NGMRKGQIDT ALKTASSGYL TRKLVDVAQD 800
    CIITEKDCGT DKGIEVKSVI EGGEVIVPLA EKILGRTAAI DIFHPVTNDL 850
    ILNKGELINE AKLEQIESAG LDRIMIKSVL TCESTTGICS ICYGRDLATG 900
    TLVSEGEAIG VIAAQSIGEP GTQLTMRTFH IGGAATKGAE VSSVEASYDA 950
    KVKIISRNVV INSEERKIVM SRNCELLLLD NNGNEKARHK IPYGARLLVD 1000
    DGDMVIKTQK LAEWDPYTIP IITEKSGKVL FKDMVEGISI RDVTDEATGI 1050
    PSKVIIESKQ YSRGAELRPR IQLLDAKGEV IALSNGLEAR YYLPVGAVLS 1100
    VEDGVQISVG DIIARIPKES TTTKDITGGL PRVAELVEAR RPKDHAVIAE 1150
    IDGRVEFGKD YKSKRRIIIH PIDETMSIEY MVPKGKHVVV NEGDFVKKGD 1200
    LLIDGNPVLQ DILKVMGVEV LANYIVKEVQ AVYRLQGVKI DDKHIEVIIR 1250
    QMLQKVEITD SGGTTLLAGE KIDRHEFEEI NEKAIKNGLK PAEAQLILQG 1300
    ITKASLQTRS FISAASFQET TRVLTEAAIA GKIDKLRGLK ENVIVGRLVP 1350
    AGTGYFMDKM RKAAVKLDEE NV 1372
    Length:1,372
    Mass (Da):153,405
    Last modified:July 5, 2005 - v1
    Checksum:i864E04C0B485E8CB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61996.1.
    RefSeqiYP_247161.1. NC_007109.1.

    Genome annotation databases

    EnsemblBacteriaiAAY61996; AAY61996; RF_1145.
    GeneIDi3401442.
    KEGGirfe:RF_1145.
    PATRICi17893134. VBIRicFel64634_1381.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY61996.1 .
    RefSeqi YP_247161.1. NC_007109.1.

    3D structure databases

    ProteinModelPortali Q4UKD5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 315456.RF_1145.

    Proteomic databases

    PRIDEi Q4UKD5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY61996 ; AAY61996 ; RF_1145 .
    GeneIDi 3401442.
    KEGGi rfe:RF_1145.
    PATRICi 17893134. VBIRicFel64634_1381.

    Phylogenomic databases

    eggNOGi COG0086.
    HOGENOMi HOG000218386.
    KOi K03046.
    OMAi AYDSEFL.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci RFEL315456:GKEK-1178-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
      Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
      PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-1525 / URRWXCal2.

    Entry informationi

    Entry nameiRPOC_RICFE
    AccessioniPrimary (citable) accession number: Q4UKD5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 7, 2006
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia felis (Rickettsia azadi)
      Rickettsia felis (strain URRWXCal2): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3