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Q4UKD5

- RPOC_RICFE

UniProt

Q4UKD5 - RPOC_RICFE

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Protein
DNA-directed RNA polymerase subunit beta'
Gene
rpoC, RF_1145
Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciRFEL315456:GKEK-1178-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
Short name:
RNAP subunit beta'
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene namesi
Name:rpoC
Ordered Locus Names:RF_1145
OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Taxonomic identifieri315456 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000008548: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13721372DNA-directed RNA polymerase subunit beta'UniRule annotation
PRO_0000225573Add
BLAST

Proteomic databases

PRIDEiQ4UKD5.

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.

Protein-protein interaction databases

STRINGi315456.RF_1145.

Structurei

3D structure databases

ProteinModelPortaliQ4UKD5.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4UKD5-1 [UniParc]FASTAAdd to Basket

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MSVVNFYGQL SNTQQFDQIR INIASPDQVR SWSFGEVTKP ETINYRTFKP     50
EKDGLFCARI FGPVKDYECL CGKYKRMKNR GITCEKCGVE VTVSRVRRER 100
MGHIELAAPV AHIWFLKSLP SRISTLLDMT MRDVEKILYF ENYVVVDPGL 150
SILQKGELLT EEELQKAKDK YGEDAFTASI GAEVIQQMLK EIDFLKLKQE 200
LYEELQTTSS EVKKKKLVKR LKLVEDFLES ENKPEWMIMD VLPVIPPEIR 250
PLVMLDGGRF ATSDLNELYR RVINRNNRLK KLIESKAPDI IVRNEKRMLQ 300
EAVDALFDNG RRGRAAKNAN KRPFKSLSDM LKGKQGRFRQ NLLGKRVDYS 350
GRSVIVVGSE LKLHQCGLPK KMALELFKPF IYSKLELYGI ATTIKAAKRM 400
VEAEKPEVWD VLEEVIREHP VLLNRAPTLH RLGIQAFEPL LIEGKAIQLY 450
PLVCAAFNAD FDGDQMAVHI PLSIEAQLEA RVFMMSTNNI LSPANGRPII 500
VPDKDIVLGL YYLTLAFDNE VGEGMMFSDL AEMEHALYNK FITIHTKIKY 550
RRNQLNAEGK MVPVIIDTTY GRLMVGELLP SNPNIEFKFI NKQLTKKDIS 600
LVIDLVYRHC GQKATVIFAD QLMKLGFKYA CSSGISFGMD DMVVPESKST 650
HINETQLEIK EFEQQYSNGL ITYGEKYNKV VDAWSRCTDR VANDMMKEIA 700
TPPVSDDPNH QKINAIYMMA ISGARGSFQQ IKQLGGMRGL MTKSNGQIIQ 750
TPIISNFKEG LTEFECFNSA NGMRKGQIDT ALKTASSGYL TRKLVDVAQD 800
CIITEKDCGT DKGIEVKSVI EGGEVIVPLA EKILGRTAAI DIFHPVTNDL 850
ILNKGELINE AKLEQIESAG LDRIMIKSVL TCESTTGICS ICYGRDLATG 900
TLVSEGEAIG VIAAQSIGEP GTQLTMRTFH IGGAATKGAE VSSVEASYDA 950
KVKIISRNVV INSEERKIVM SRNCELLLLD NNGNEKARHK IPYGARLLVD 1000
DGDMVIKTQK LAEWDPYTIP IITEKSGKVL FKDMVEGISI RDVTDEATGI 1050
PSKVIIESKQ YSRGAELRPR IQLLDAKGEV IALSNGLEAR YYLPVGAVLS 1100
VEDGVQISVG DIIARIPKES TTTKDITGGL PRVAELVEAR RPKDHAVIAE 1150
IDGRVEFGKD YKSKRRIIIH PIDETMSIEY MVPKGKHVVV NEGDFVKKGD 1200
LLIDGNPVLQ DILKVMGVEV LANYIVKEVQ AVYRLQGVKI DDKHIEVIIR 1250
QMLQKVEITD SGGTTLLAGE KIDRHEFEEI NEKAIKNGLK PAEAQLILQG 1300
ITKASLQTRS FISAASFQET TRVLTEAAIA GKIDKLRGLK ENVIVGRLVP 1350
AGTGYFMDKM RKAAVKLDEE NV 1372
Length:1,372
Mass (Da):153,405
Last modified:July 5, 2005 - v1
Checksum:i864E04C0B485E8CB
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000053 Genomic DNA. Translation: AAY61996.1.
RefSeqiYP_247161.1. NC_007109.1.

Genome annotation databases

EnsemblBacteriaiAAY61996; AAY61996; RF_1145.
GeneIDi3401442.
KEGGirfe:RF_1145.
PATRICi17893134. VBIRicFel64634_1381.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000053 Genomic DNA. Translation: AAY61996.1 .
RefSeqi YP_247161.1. NC_007109.1.

3D structure databases

ProteinModelPortali Q4UKD5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 315456.RF_1145.

Proteomic databases

PRIDEi Q4UKD5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAY61996 ; AAY61996 ; RF_1145 .
GeneIDi 3401442.
KEGGi rfe:RF_1145.
PATRICi 17893134. VBIRicFel64634_1381.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci RFEL315456:GKEK-1178-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
    Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
    PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC VR-1525 / URRWXCal2.

Entry informationi

Entry nameiRPOC_RICFE
AccessioniPrimary (citable) accession number: Q4UKD5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: July 5, 2005
Last modified: May 14, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Rickettsia felis (Rickettsia azadi)
    Rickettsia felis (strain URRWXCal2): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi