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Q4UKC1 (DHSC_RICFE) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Succinate dehydrogenase cytochrome b556 subunit

Short name=Cytochrome b-556
Gene names
Name:sdhC
Ordered Locus Names:RF_1163
OrganismRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) [Complete proteome] [HAMAP]
Taxonomic identifier315456 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group

Protein attributes

Sequence length124 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Membrane-anchoring subunit of succinate dehydrogenase (SDH) By similarity.

Cofactor

Heme group. The heme is bound between the two transmembrane subunits By similarity.

Pathway

Carbohydrate metabolism; tricarboxylic acid cycle.

Subunit structure

Part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur protein, plus two membrane-anchoring proteins, SdhC and SdhD. The complex can form homotrimers By similarity.

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the cytochrome b560 family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 124124Succinate dehydrogenase cytochrome b556 subunit
PRO_0000281051

Regions

Topological domain1 – 2929Cytoplasmic By similarity
Transmembrane30 – 5526Helical; By similarity
Topological domain56 – 6712Periplasmic By similarity
Transmembrane68 – 8821Helical; By similarity
Topological domain89 – 10315Cytoplasmic By similarity
Transmembrane104 – 12421Helical; By similarity

Sites

Metal binding831Iron (heme axial ligand); shared with second transmembrane subunit By similarity

Sequences

Sequence LengthMass (Da)Tools
Q4UKC1 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: A756A3E50CE104D3

FASTA12414,358
        10         20         30         40         50         60 
MTKTKQEIYN KRPTSPHLSI YKLQISSTLS ILHRMTGVAL FFAVSILAWW LILSKYDNNY 

        70         80         90        100        110        120 
LQFANCCIIK ICLVAVSYAW FYHLCNGIRH LFWDIGYGFS IKAVNITGWC VVVCSILLTM 


LLWV 

« Hide

References

[1]"The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-1525 / URRWXCal2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000053 Genomic DNA. Translation: AAY62014.1.
RefSeqYP_247179.1. NC_007109.1.

3D structure databases

ProteinModelPortalQ4UKC1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING315456.RF_1163.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY62014; AAY62014; RF_1163.
GeneID3401461.
KEGGrfe:RF_1163.
PATRIC17893174. VBIRicFel64634_1400.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2009.
HOGENOMHOG000160253.
KOK00241.
OMAWALMHHM.
OrthoDBEOG647V36.
ProtClustDBCLSK870757.

Enzyme and pathway databases

BioCycRFEL315456:GKEK-1197-MONOMER.
UniPathwayUPA00223.

Family and domain databases

InterProIPR018495. Succ_DH_cyt_bsu_CS.
IPR014314. Succ_DH_cytb556.
IPR014361. Succ_DH_cytb560.
IPR000701. Succ_DH_Fumarate_Rdtase_TM-su.
[Graphical view]
PfamPF01127. Sdh_cyt. 1 hit.
[Graphical view]
PIRSFPIRSF000178. SDH_cyt_b560. 1 hit.
TIGRFAMsTIGR02970. succ_dehyd_cytB. 1 hit.
PROSITEPS01000. SDH_CYT_1. 1 hit.
PS01001. SDH_CYT_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDHSC_RICFE
AccessionPrimary (citable) accession number: Q4UKC1
Entry history
Integrated into UniProtKB/Swiss-Prot: March 20, 2007
Last sequence update: July 5, 2005
Last modified: February 19, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia felis (Rickettsia azadi)

Rickettsia felis (strain URRWXCal2): entries and gene names

PATHWAY comments

Index of metabolic and biosynthesis pathways