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Q4UJW3

- SSB_RICFE

UniProt

Q4UJW3 - SSB_RICFE

Protein

Single-stranded DNA-binding protein

Gene

ssb

Organism
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (05 Jul 2005)
      Previous versions | rss
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    Functioni

    Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi54 – 607UniRule annotation

    GO - Molecular functioni

    1. single-stranded DNA binding Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: UniProtKB-KW
    2. DNA repair Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Biological processi

    DNA damage, DNA recombination, DNA repair, DNA replication

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    BioCyciRFEL315456:GKEK-1361-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Single-stranded DNA-binding proteinUniRule annotation
    Short name:
    SSBUniRule annotation
    Gene namesi
    Name:ssb
    Ordered Locus Names:RF_1325
    OrganismiRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi)
    Taxonomic identifieri315456 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
    ProteomesiUP000008548: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 152152Single-stranded DNA-binding proteinPRO_0000286492Add
    BLAST

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Protein-protein interaction databases

    STRINGi315456.RF_1325.

    Structurei

    3D structure databases

    ProteinModelPortaliQ4UJW3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini5 – 111107SSBUniRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi147 – 1526Important for interaction with partner proteinsUniRule annotation

    Sequence similaritiesi

    Contains 1 SSB domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0629.
    HOGENOMiHOG000106483.
    KOiK03111.
    OMAiDKHESFD.
    OrthoDBiEOG6M9F32.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_00984. SSB.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR000424. Primosome_PriB/ssb.
    IPR011344. ssDNA-bd.
    [Graphical view]
    PANTHERiPTHR10302. PTHR10302. 1 hit.
    PfamiPF00436. SSB. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002070. SSB. 1 hit.
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00621. ssb. 1 hit.
    PROSITEiPS50935. SSB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q4UJW3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGSLNKVIL IGNVGRDPEI RTTGEGKKII NLSLATTETW KDRITSERKE    50
    RTEWHRVVIF SEGLVSVVER YVTKGSKLYI EGSLQTRKWN DNSGQEKYTT 100
    EVVLQNFNSQ LILLDSKNSN NHTQDSGRSE YKHPEAKNHS FDHSDLDDEI 150
    PF 152
    Length:152
    Mass (Da):17,393
    Last modified:July 5, 2005 - v1
    Checksum:i20CA4C9F3A315910
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY62176.1.
    RefSeqiWP_011271625.1. NC_007109.1.
    YP_247341.1. NC_007109.1.

    Genome annotation databases

    EnsemblBacteriaiAAY62176; AAY62176; RF_1325.
    GeneIDi3400880.
    KEGGirfe:RF_1325.
    PATRICi17893570. VBIRicFel64634_1596.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000053 Genomic DNA. Translation: AAY62176.1 .
    RefSeqi WP_011271625.1. NC_007109.1.
    YP_247341.1. NC_007109.1.

    3D structure databases

    ProteinModelPortali Q4UJW3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 315456.RF_1325.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAY62176 ; AAY62176 ; RF_1325 .
    GeneIDi 3400880.
    KEGGi rfe:RF_1325.
    PATRICi 17893570. VBIRicFel64634_1596.

    Phylogenomic databases

    eggNOGi COG0629.
    HOGENOMi HOG000106483.
    KOi K03111.
    OMAi DKHESFD.
    OrthoDBi EOG6M9F32.

    Enzyme and pathway databases

    BioCyci RFEL315456:GKEK-1361-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_00984. SSB.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR000424. Primosome_PriB/ssb.
    IPR011344. ssDNA-bd.
    [Graphical view ]
    PANTHERi PTHR10302. PTHR10302. 1 hit.
    Pfami PF00436. SSB. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002070. SSB. 1 hit.
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00621. ssb. 1 hit.
    PROSITEi PS50935. SSB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
      Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
      PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC VR-1525 / URRWXCal2.

    Entry informationi

    Entry nameiSSB_RICFE
    AccessioniPrimary (citable) accession number: Q4UJW3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 15, 2007
    Last sequence update: July 5, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Rickettsia felis (Rickettsia azadi)
      Rickettsia felis (strain URRWXCal2): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3