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Q4UJW3 (SSB_RICFE) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Single-stranded DNA-binding protein

Short name=SSB
Gene names
Name:ssb
Ordered Locus Names:RF_1325
OrganismRickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) [Complete proteome] [HAMAP]
Taxonomic identifier315456 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group

Protein attributes

Sequence length152 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism By similarity. HAMAP-Rule MF_00984

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00984

Sequence similarities

Contains 1 SSB domain.

Ontologies

Keywords
   Biological processDNA damage
DNA recombination
DNA repair
DNA replication
   LigandDNA-binding
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

DNA replication

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionsingle-stranded DNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 152152Single-stranded DNA-binding protein HAMAP-Rule MF_00984
PRO_0000286492

Regions

Domain5 – 111107SSB
DNA binding54 – 607 By similarity
Motif147 – 1526Important for interaction with partner proteins By similarity

Sequences

Sequence LengthMass (Da)Tools
Q4UJW3 [UniParc].

Last modified July 5, 2005. Version 1.
Checksum: 20CA4C9F3A315910

FASTA15217,393
        10         20         30         40         50         60 
MAGSLNKVIL IGNVGRDPEI RTTGEGKKII NLSLATTETW KDRITSERKE RTEWHRVVIF 

        70         80         90        100        110        120 
SEGLVSVVER YVTKGSKLYI EGSLQTRKWN DNSGQEKYTT EVVLQNFNSQ LILLDSKNSN 

       130        140        150 
NHTQDSGRSE YKHPEAKNHS FDHSDLDDEI PF 

« Hide

References

[1]"The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite."
Ogata H., Renesto P., Audic S., Robert C., Blanc G., Fournier P.-E., Parinello H., Claverie J.-M., Raoult D.
PLoS Biol. 3:1-12(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC VR-1525 / URRWXCal2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000053 Genomic DNA. Translation: AAY62176.1.
RefSeqYP_247341.1. NC_007109.1.

3D structure databases

ProteinModelPortalQ4UJW3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING315456.RF_1325.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAY62176; AAY62176; RF_1325.
GeneID3400880.
KEGGrfe:RF_1325.
PATRIC17893570. VBIRicFel64634_1596.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0629.
HOGENOMHOG000106483.
KOK03111.
OMAEIRTTQN.
OrthoDBEOG6M9F32.
ProtClustDBPRK06642.

Enzyme and pathway databases

BioCycRFEL315456:GKEK-1361-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
HAMAPMF_00984. SSB.
InterProIPR012340. NA-bd_OB-fold.
IPR000424. Primosome_PriB/ssb.
IPR011344. ssDNA-bd.
[Graphical view]
PANTHERPTHR10302. PTHR10302. 1 hit.
PfamPF00436. SSB. 1 hit.
[Graphical view]
PIRSFPIRSF002070. SSB. 1 hit.
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00621. ssb. 1 hit.
PROSITEPS50935. SSB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSSB_RICFE
AccessionPrimary (citable) accession number: Q4UJW3
Entry history
Integrated into UniProtKB/Swiss-Prot: May 15, 2007
Last sequence update: July 5, 2005
Last modified: March 19, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rickettsia felis (Rickettsia azadi)

Rickettsia felis (strain URRWXCal2): entries and gene names