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Q4U108 (Q4U108_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
NF-kB2 splice variant 1 EMBL AAY44750.1
Gene names
Name:Nfkb2 MGI 1099800
OrganismMus musculus (Mouse) EMBL AAY44750.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length776 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 RHD (Rel-like) domain. RuleBase RU003997

Sequences

Sequence LengthMass (Da)Tools
Q4U108 [UniParc].

Last modified July 19, 2005. Version 1.
Checksum: 447A403AAE006274

FASTA77684,205
        10         20         30         40         50         60 
MDNCYDPGLD GIPEYDDFEF SPSIVEPKDP APETADGPYL VIVEQPKQRG FRFRYGCEGP 

        70         80         90        100        110        120 
SHGGLPGASS EKGRKTYPTV KICNYEGPAK IGVDLVTHSD PPRAHAHSLV GKQCSELGVC 

       130        140        150        160        170        180 
AVSVGPKDMT AQFNNLGVLH VTKKNMMEIM IQKLQRQRLR SKPQGLTEAE RRELEQEAKE 

       190        200        210        220        230        240 
LKKVMDLSIV RLRFSAFLRA SDGSFSLPLK PVISQPIHDS KSPGASNLKI SRMDKTAGSV 

       250        260        270        280        290        300 
RGGDEVYLLC DKVQKDDIEV RFYEDDENGW QAFGDFSPTD VHKQYAIVFR TPPYHKMKIE 

       310        320        330        340        350        360 
RPVTVFLQLK RKRGGDVSDS KQFTYYPLVE DKEEVQRKRR KALPTFSQPF GGGSHMGGGS 

       370        380        390        400        410        420 
GGSAGGYGGA GGGGSLGFFS SSLAYNPYQS GAAPMGYYPG GGGGAQMAGS RRDTDAGEGA 

       430        440        450        460        470        480 
EEPRTPPEAP QGEPQALDTL QRAREYNARL FGLAQRSARA LLDYGVTADA RALLAGQRHL 

       490        500        510        520        530        540 
LMAQDENGDT PLHLAIIHGQ TGVIEQIAHV IYHAQYLGVI NLTNHLHQTP LHLAVITGQT 

       550        560        570        580        590        600 
RVVSFLLQVG ADPTLLDRHG DSALHLALRA GAAAPELLQA LLRSGAHAVP QILHMPDFEG 

       610        620        630        640        650        660 
LYPVHLAVHA RSPECLDLLV DCGAEVEAPE RQGGRTALHL ATEMEELGLV THLVTKLHAN 

       670        680        690        700        710        720 
VNARTFAGNT PLHLAAGLGS PTLTRLLLKA GTDIHAENEE PLCPLPSPST SGSDSDSEGP 

       730        740        750        760        770 
ERDTQRNFRG HTPLDLTCST KGQGCPWGMQ PCRTWSNCWM VPKPRAAGQS WQSDWG

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References

[1]"CD14-dependent modulation of NF-kappaB alternative splicing in the lung after burn injury."
Phan H.H., Cho K., Sainz-Lyon K.S., Shin S., Greenhalgh D.G.
Gene 371:121-129(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: B6.129S-Cd14 EMBL AAY44750.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DQ020182 mRNA. Translation: AAY44750.1.
IPIIPI00123474.
UniGeneMm.102365.

3D structure databases

ProteinModelPortalQ4U108.
SMRQ4U108. Positions 37-327.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:1099800. Nfkb2.

Phylogenomic databases

HOVERGENHBG052613.
InParanoidQ4U108.

Gene expression databases

GenevestigatorQ4U108.

Family and domain databases

Gene3D1.25.40.20. 1 hit.
2.60.40.10. 1 hit.
2.60.40.340. 1 hit.
InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
IPR002909. IPT_TIG_rcpt.
IPR000451. NF_Rel_Dor.
IPR008967. p53-like_TF_DNA-bd.
IPR011539. RHD.
[Graphical view]
PfamPF00023. Ank. 1 hit.
PF12796. Ank_2. 2 hits.
PF00554. RHD. 1 hit.
[Graphical view]
PRINTSPR00057. NFKBTNSCPFCT.
SMARTSM00248. ANK. 6 hits.
SM00429. IPT. 1 hit.
[Graphical view]
SUPFAMSSF48403. ANK. 1 hit.
SSF81296. Ig_E-set. 1 hit.
SSF49417. P53_like_DNA_bnd. 1 hit.
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 5 hits.
PS01204. REL_1. 1 hit.
PS50254. REL_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSNFKB2. mouse.
SOURCESearch...

Entry information

Entry nameQ4U108_MOUSE
AccessionPrimary (citable) accession number: Q4U108
Entry history
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: April 3, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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