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Q4QQR7 (Q4QQR7_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Dsp protein EMBL AAH98071.1
Gene names
Name:Dsp EMBL AAH98071.1 RGD 1305794
OrganismRattus norvegicus (Rat) EMBL AAH98071.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length635 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Gene Ontology (GO)
   Biological_processadherens junction organization

Inferred from electronic annotation. Source: Compara

bundle of His cell to Purkinje myocyte communication

Inferred from electronic annotation. Source: Compara

cell-cell adhesion

Inferred from electronic annotation. Source: Compara

desmosome organization

Inferred from electronic annotation. Source: Compara

intermediate filament organization

Inferred from electronic annotation. Source: Compara

keratinocyte differentiation

Inferred from electronic annotation. Source: Compara

peptide cross-linking

Inferred from electronic annotation. Source: Compara

protein localization to adherens junction

Inferred from electronic annotation. Source: Compara

regulation of heart rate by cardiac conduction

Inferred from electronic annotation. Source: Compara

regulation of ventricular cardiac muscle cell action potential

Inferred from electronic annotation. Source: Compara

skin development

Inferred from electronic annotation. Source: Compara

ventricular compact myocardium morphogenesis

Inferred from electronic annotation. Source: Compara

wound healing

Inferred from expression pattern PubMed 11125272. Source: RGD

   Cellular_componentbasolateral plasma membrane

Inferred from electronic annotation. Source: Compara

cornified envelope

Inferred from electronic annotation. Source: Compara

desmosome

Inferred from direct assay PubMed 16406610. Source: RGD

fascia adherens

Inferred from direct assay PubMed 16406610. Source: RGD

intermediate filament

Inferred from electronic annotation. Source: Compara

membrane

Inferred from direct assay PubMed 19723622. Source: MGI

mitochondrion

Inferred from electronic annotation. Source: Compara

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: Compara

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAH98071.1

Sequences

Sequence LengthMass (Da)Tools
Q4QQR7 [UniParc].

Last modified July 19, 2005. Version 1.
Checksum: FB027E6B587CB1B4

FASTA63569,750
        10         20         30         40         50         60 
LESGQISYDE VGERIKDFLQ GSSCIAGIYN ETTKQKLGIY EAMKIGLVRP GTALELLEAQ 

        70         80         90        100        110        120 
AATGFIVDPV SNLRLPVEEA YKRGLVGIEF KEKLLSAERA VTGYNDPETG NIISLFQAMN 

       130        140        150        160        170        180 
KELIEKGHGI RLLEAQIATG GIIDPKESHR LPVDMAYKRG YFNEELSEIL SDPSDDTKGF 

       190        200        210        220        230        240 
FDPNTEENLT YLQLKERCIK DEETGLCLLP LKEKKKQVQT SQKNTLRKRR VVIVDPETNK 

       250        260        270        280        290        300 
EMSVQEAYKK GLIDYETFKE LCEQECEWEE ITITGSDGST RVVLVDRKTG SQYDIQDAID 

       310        320        330        340        350        360 
KGLVDRKFFD QYRSGSLSLT QFADMISLKN GVGTSSGLSG SVNDDVFSSS RHESVSKIST 

       370        380        390        400        410        420 
ISSVRNLTIR SSSLSDPLEE SSPIAAIFDT ENLEKISITE GIERGIVDSI TGQRLLEAQA 

       430        440        450        460        470        480 
CTGGIIHPTT GQKLSLQDAV SQGLIDQDMA TRLKPAQKAF IGFEGVKGKK KMSAAEAVKE 

       490        500        510        520        530        540 
KWLPYEAGQR FLEFQFLTGG LVDPEVHGRI STEEAIRKGF IDGRAAQRLQ DISSYAKILT 

       550        560        570        580        590        600 
CPKTKLKISY KDAMNRSMVE DITGLRLLEA ASVSSKGLPS PYNMSAPGSR SGSRSGSRSG 

       610        620        630 
SRSGSRSGSR RGSFDATGNS SYSYSYSFSS SSIGY

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Placenta EMBL AAH98071.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC098071 mRNA. Translation: AAH98071.1.
IPIIPI00366081.
UniGeneRn.231913.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000018649.
Q4QQR7.

PTM databases

PhosphoSiteQ4QQR7.

Proteomic databases

PaxDbQ4QQR7.
PRIDEQ4QQR7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1305794. rat.

Organism-specific databases

RGD1305794. Dsp.

Phylogenomic databases

eggNOGNOG12793.
HOGENOMHOG000112198.
HOVERGENHBG068419.
InParanoidQ4QQR7.
OMAGILECIQ.
OrthoDBEOG43R3KR.

Gene expression databases

ArrayExpressQ4QQR7.
GenevestigatorQ4QQR7.

Family and domain databases

InterProIPR001101. Plectin_repeat.
[Graphical view]
PfamPF00681. Plectin. 6 hits.
[Graphical view]
SMARTSM00250. PLEC. 12 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ4QQR7_RAT
AccessionPrimary (citable) accession number: Q4QQR7
Entry history
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: April 3, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info