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Protein
Submitted name:

Histone H3

Gene

LMJF_10_0870

Organism
Leishmania major
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Histone H3Imported
Submitted name:
Putative histone H3Imported
Gene namesi
ORF Names:LMJF_10_0870Imported, LMJF_10_0990Imported, LMJF_16_0570Imported, LMJF_16_0575Imported, LMJF_16_0610Imported
OrganismiLeishmania majorImported
Taxonomic identifieri5664 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeLeishmaniinaeLeishmania
Proteomesi
  • UP000000542 Componentsi: Chromosome 10, Chromosome 16

Subcellular locationi

  • Chromosome SAAS annotation
  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

ChromosomeSAAS annotation, NucleusSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi5664.LmjF.16.0610.

Structurei

3D structure databases

SMRiQ4QHB5. Positions 11-129.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 126125HistoneInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H3 family.SAAS annotation

Phylogenomic databases

eggNOGiKOG1745. Eukaryota.
COG2036. LUCA.
HOGENOMiHOG000155290.
KOiK11253.
OMAiELLMQCA.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_H2A/H2B/H3.
IPR000164. Histone_H3/CENP-A.
[Graphical view]
PANTHERiPTHR11426. PTHR11426. 1 hit.
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00622. HISTONEH3.
SMARTiSM00428. H3. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00959. HISTONE_H3_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4QHB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRTKETARA KRTITSKKSK KAPSAVSGVK MSHRRWRPGT CAIREIRKFQ
60 70 80 90 100
KSTSLLIQCA PFQRLVREVS SAQKEGLRFQ SSAIMALQEA TEAYIVSLMA
110 120 130
DTNLACIHAK RVTIQPKDIQ LALRLRGERH
Length:130
Mass (Da):14,678
Last modified:July 19, 2005 - v1
Checksum:iA16D8715B6B5E481
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796406 Genomic DNA. Translation: CAJ02838.1.
FR796406 Genomic DNA. Translation: CAJ02905.1.
FR796412 Genomic DNA. Translation: CAJ03570.1.
FR796412 Genomic DNA. Translation: CAJ03571.1.
FR796412 Genomic DNA. Translation: CAJ03578.1.
RefSeqiXP_001681421.1. XM_001681369.1.
XP_001681433.1. XM_001681381.1.
XP_001682135.1. XM_001682083.1.
XP_001682136.1. XM_001682084.1.
XP_001682140.1. XM_001682088.1.

Genome annotation databases

EnsemblProtistsiLmjF.10.0870:mRNA; LmjF.10.0870:pep; LmjF.10.0870.
LmjF.10.0990:mRNA; LmjF.10.0990:pep; LmjF.10.0990.
LmjF.16.0570:mRNA; LmjF.16.0570:pep; LmjF.16.0570.
LmjF.16.0575:mRNA; LmjF.16.0575:pep; LmjF.16.0575.
LmjF.16.0610:mRNA; LmjF.16.0610:pep; LmjF.16.0610.
GeneIDi5649690.
5649704.
5650602.
5650603.
5650607.
KEGGilma:LMJF_10_0870.
lma:LMJF_10_0990.
lma:LMJF_16_0570.
lma:LMJF_16_0575.
lma:LMJF_16_0610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796406 Genomic DNA. Translation: CAJ02838.1.
FR796406 Genomic DNA. Translation: CAJ02905.1.
FR796412 Genomic DNA. Translation: CAJ03570.1.
FR796412 Genomic DNA. Translation: CAJ03571.1.
FR796412 Genomic DNA. Translation: CAJ03578.1.
RefSeqiXP_001681421.1. XM_001681369.1.
XP_001681433.1. XM_001681381.1.
XP_001682135.1. XM_001682083.1.
XP_001682136.1. XM_001682084.1.
XP_001682140.1. XM_001682088.1.

3D structure databases

SMRiQ4QHB5. Positions 11-129.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5664.LmjF.16.0610.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiLmjF.10.0870:mRNA; LmjF.10.0870:pep; LmjF.10.0870.
LmjF.10.0990:mRNA; LmjF.10.0990:pep; LmjF.10.0990.
LmjF.16.0570:mRNA; LmjF.16.0570:pep; LmjF.16.0570.
LmjF.16.0575:mRNA; LmjF.16.0575:pep; LmjF.16.0575.
LmjF.16.0610:mRNA; LmjF.16.0610:pep; LmjF.16.0610.
GeneIDi5649690.
5649704.
5650602.
5650603.
5650607.
KEGGilma:LMJF_10_0870.
lma:LMJF_10_0990.
lma:LMJF_16_0570.
lma:LMJF_16_0575.
lma:LMJF_16_0610.

Phylogenomic databases

eggNOGiKOG1745. Eukaryota.
COG2036. LUCA.
HOGENOMiHOG000155290.
KOiK11253.
OMAiELLMQCA.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_H2A/H2B/H3.
IPR000164. Histone_H3/CENP-A.
[Graphical view]
PANTHERiPTHR11426. PTHR11426. 1 hit.
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00622. HISTONEH3.
SMARTiSM00428. H3. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00959. HISTONE_H3_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of the kinetoplastid parasite, Leishmania major."
    Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G., Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R., Anupama A., Apostolou Z., Attipoe P., Bason N., Bauser C., Beck A., Beverley S.M., Bianchettin G.
    , Borzym K., Bothe G., Bruschi C.V., Collins M., Cadag E., Ciarloni L., Clayton C., Coulson R.M., Cronin A., Cruz A.K., Davies R.M., De Gaudenzi J., Dobson D.E., Duesterhoeft A., Fazelina G., Fosker N., Frasch A.C., Fraser A., Fuchs M., Gabel C., Goble A., Goffeau A., Harris D., Hertz-Fowler C., Hilbert H., Horn D., Huang Y., Klages S., Knights A., Kube M., Larke N., Litvin L., Lord A., Louie T., Marra M., Masuy D., Matthews K., Michaeli S., Mottram J.C., Muller-Auer S., Munden H., Nelson S., Norbertczak H., Oliver K., O'neil S., Pentony M., Pohl T.M., Price C., Purnelle B., Quail M.A., Rabbinowitsch E., Reinhardt R., Rieger M., Rinta J., Robben J., Robertson L., Ruiz J.C., Rutter S., Saunders D., Schafer M., Schein J., Schwartz D.C., Seeger K., Seyler A., Sharp S., Shin H., Sivam D., Squares R., Squares S., Tosato V., Vogt C., Volckaert G., Wambutt R., Warren T., Wedler H., Woodward J., Zhou S., Zimmermann W., Smith D.F., Blackwell J.M., Stuart K.D., Barrell B., Myler P.J.
    Science 309:436-442(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FriedlinImported and MHOM/IL/81/FriedlinImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FriedlinImported and MHOM/IL/81/FriedlinImported.

Entry informationi

Entry nameiQ4QHB5_LEIMA
AccessioniPrimary (citable) accession number: Q4QHB5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: May 11, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.