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Protein
Submitted name:

Complete genome, chromosome 26

Gene

LMJF_26_1340

Organism
Leishmania major
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Complete genome, chromosome 26Imported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:LMJF_26_1340Imported
OrganismiLeishmania majorImported
Taxonomic identifieri5664 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeLeishmaniinaeLeishmania
ProteomesiUP000000542 Componenti: Chromosome 26

Interactioni

Protein-protein interaction databases

STRINGi5664.LmjF.26.1340.

Structurei

3D structure databases

ProteinModelPortaliQ4Q960.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000258022.
InParanoidiQ4Q960.
KOiK10747.
OMAiTRNLLPM.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR025487. DUF4379.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
PF14311. DUF4379. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4Q960-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKATVLRRLG GSGLVGHPTL LRLRAVKRAA TAKVKGTARS GRAKEVAVPA
60 70 80 90 100
AGSGHGSHKL SLADFHPAIA RTWIAAASNK MLQPQHVAPD SRKLAWWICP
110 120 130 140 150
SCHHQHNKRI DLHLAAGGAC PKCEAKPPLA GGASAKKSAS SSRGASNPAS
160 170 180 190 200
PLRKKQASAA SAHAPVPAAA ALRHRCRPNS TLDTIGAPNA NLLSKSVADN
210 220 230 240 250
QYLRVQETRN LLPMLAKSYE KERWKIAPDE VLQVSPKLDG IRCVAAYRID
260 270 280 290 300
TKQVLFFSRS GTLFECCDDT IEPALRYLFE KDPTLVLDGE LYNDSINLVQ
310 320 330 340 350
LGTVCKAAGK ATPPPPTAAL SGADPVSAFY NALLVATYGK TKRKGGSAPA
360 370 380 390 400
AAVPQADAPT VIGFDQLTSA IRTTRQWRTP EVAALQRQLQ YHVFDVLYSR
410 420 430 440 450
EFPYGRGSAV PFSVRYGVLE RLLASATAHN LANISKYNPL VLRRVPSYPC
460 470 480 490 500
TIDAVDAVLQ AAIRVSYEGV MIRRECQGAT TAAGKDGSEK MESATKKIKR
510 520 530 540 550
SAASSGSKAS AGASTANSDG GYGYGQRSST LLKYKVMQDA EYVIVGAVEG
560 570 580 590 600
SGKWKGFLGS FICVTPDKKH RFTVTPASTD ADKRRMWQSW KTVYKGKALT
610 620 630
VQYQEITADG VPRFPVGKCV RGAADGRDWL
Length:630
Mass (Da):67,588
Last modified:July 19, 2005 - v1
Checksum:iB8C66DBE1149AD09
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796422 Genomic DNA. Translation: CAJ05226.1.
RefSeqiXP_001684138.1. XM_001684086.1.

Genome annotation databases

EnsemblProtistsiLmjF.26.1340:mRNA; LmjF.26.1340:pep; LmjF.26.1340.
GeneIDi5652862.
KEGGilma:LMJF_26_1340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796422 Genomic DNA. Translation: CAJ05226.1.
RefSeqiXP_001684138.1. XM_001684086.1.

3D structure databases

ProteinModelPortaliQ4Q960.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5664.LmjF.26.1340.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiLmjF.26.1340:mRNA; LmjF.26.1340:pep; LmjF.26.1340.
GeneIDi5652862.
KEGGilma:LMJF_26_1340.

Phylogenomic databases

HOGENOMiHOG000258022.
InParanoidiQ4Q960.
KOiK10747.
OMAiTRNLLPM.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR025487. DUF4379.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
PF14311. DUF4379. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of the kinetoplastid parasite, Leishmania major."
    Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G., Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R., Anupama A., Apostolou Z., Attipoe P., Bason N., Bauser C., Beck A., Beverley S.M., Bianchettin G.
    , Borzym K., Bothe G., Bruschi C.V., Collins M., Cadag E., Ciarloni L., Clayton C., Coulson R.M., Cronin A., Cruz A.K., Davies R.M., De Gaudenzi J., Dobson D.E., Duesterhoeft A., Fazelina G., Fosker N., Frasch A.C., Fraser A., Fuchs M., Gabel C., Goble A., Goffeau A., Harris D., Hertz-Fowler C., Hilbert H., Horn D., Huang Y., Klages S., Knights A., Kube M., Larke N., Litvin L., Lord A., Louie T., Marra M., Masuy D., Matthews K., Michaeli S., Mottram J.C., Muller-Auer S., Munden H., Nelson S., Norbertczak H., Oliver K., O'neil S., Pentony M., Pohl T.M., Price C., Purnelle B., Quail M.A., Rabbinowitsch E., Reinhardt R., Rieger M., Rinta J., Robben J., Robertson L., Ruiz J.C., Rutter S., Saunders D., Schafer M., Schein J., Schwartz D.C., Seeger K., Seyler A., Sharp S., Shin H., Sivam D., Squares R., Squares S., Tosato V., Vogt C., Volckaert G., Wambutt R., Warren T., Wedler H., Woodward J., Zhou S., Zimmermann W., Smith D.F., Blackwell J.M., Stuart K.D., Barrell B., Myler P.J.
    Science 309:436-442(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MHOM/IL/81/FriedlinImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: FriedlinImported.

Entry informationi

Entry nameiQ4Q960_LEIMA
AccessioniPrimary (citable) accession number: Q4Q960
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: June 24, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.