Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q4Q960 (Q4Q960_LEIMA) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL CAJ05226.1
Gene names
ORF Names:LMJF_26_1340 EMBL CAJ05226.1
OrganismLeishmania major [Reference proteome]
Taxonomic identifier5664 [NCBI]
Taxonomic lineageEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeLeishmaniinaeLeishmania

Protein attributes

Sequence length630 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL CAJ05226.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q4Q960 [UniParc].

Last modified July 19, 2005. Version 1.
Checksum: B8C66DBE1149AD09

FASTA63067,588
        10         20         30         40         50         60 
MKATVLRRLG GSGLVGHPTL LRLRAVKRAA TAKVKGTARS GRAKEVAVPA AGSGHGSHKL 

        70         80         90        100        110        120 
SLADFHPAIA RTWIAAASNK MLQPQHVAPD SRKLAWWICP SCHHQHNKRI DLHLAAGGAC 

       130        140        150        160        170        180 
PKCEAKPPLA GGASAKKSAS SSRGASNPAS PLRKKQASAA SAHAPVPAAA ALRHRCRPNS 

       190        200        210        220        230        240 
TLDTIGAPNA NLLSKSVADN QYLRVQETRN LLPMLAKSYE KERWKIAPDE VLQVSPKLDG 

       250        260        270        280        290        300 
IRCVAAYRID TKQVLFFSRS GTLFECCDDT IEPALRYLFE KDPTLVLDGE LYNDSINLVQ 

       310        320        330        340        350        360 
LGTVCKAAGK ATPPPPTAAL SGADPVSAFY NALLVATYGK TKRKGGSAPA AAVPQADAPT 

       370        380        390        400        410        420 
VIGFDQLTSA IRTTRQWRTP EVAALQRQLQ YHVFDVLYSR EFPYGRGSAV PFSVRYGVLE 

       430        440        450        460        470        480 
RLLASATAHN LANISKYNPL VLRRVPSYPC TIDAVDAVLQ AAIRVSYEGV MIRRECQGAT 

       490        500        510        520        530        540 
TAAGKDGSEK MESATKKIKR SAASSGSKAS AGASTANSDG GYGYGQRSST LLKYKVMQDA 

       550        560        570        580        590        600 
EYVIVGAVEG SGKWKGFLGS FICVTPDKKH RFTVTPASTD ADKRRMWQSW KTVYKGKALT 

       610        620        630 
VQYQEITADG VPRFPVGKCV RGAADGRDWL 

« Hide

References

[1]"The genome of the kinetoplastid parasite, Leishmania major."
Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G., Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R., Anupama A., Apostolou Z., Attipoe P., Bason N., Bauser C., Beck A., Beverley S.M., Bianchettin G. expand/collapse author list , Borzym K., Bothe G., Bruschi C.V., Collins M., Cadag E., Ciarloni L., Clayton C., Coulson R.M.R., Cronin A., Cruz A.K., Davies R.M., De Gaudenzi J., Dobson D.E., Duesterhoeft A., Fazelina G., Fosker N., Frasch A.C., Fraser A., Fuchs M., Gabel C., Goble A., Goffeau A., Harris D., Hertz-Fowler C., Hilbert H., Horn D., Huang Y., Klages S., Knights A., Kube M., Larke N., Litvin L., Lord A., Louie T., Marra M., Masuy D., Matthews K., Michaeli S., Mottram J.C., Mueller-Auer S., Munden H., Nelson S., Norbertczak H., Oliver K., O'neil S., Pentony M., Pohl T.M., Price C., Purnelle B., Quail M.A., Rabbinowitsch E., Reinhardt R., Rieger M., Rinta J., Robben J., Robertson L., Ruiz J.C., Rutter S., Saunders D., Schaefer M., Schein J., Schwartz D.C., Seeger K., Seyler A., Sharp S., Shin H., Sivam D., Squares R., Squares S., Tosato V., Vogt C., Volckaert G., Wambutt R., Warren T., Wedler H., Woodward J., Zhou S., Zimmermann W., Smith D.F., Blackwell J.M., Stuart K.D., Barrell B.G., Myler P.J.
Science 309:436-442(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MHOM/IL/81/Friedlin.
[2]"Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania."
Rogers M.B., Hilley J.D., Dickens N.J., Wilkes J., Bates P.A., Depledge D.P., Harris D., Her Y., Herzyk P., Imamura H., Otto T.D., Sanders M., Seeger K., Dujardin J.C., Berriman M., Smith D.F., Hertz-Fowler C., Mottram J.C.
Genome Res. 21:2129-2142(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Friedlin EMBL CAJ05226.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FR796422 Genomic DNA. Translation: CAJ05226.1.
RefSeqXP_001684138.1. XM_001684086.1.

3D structure databases

ProteinModelPortalQ4Q960.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsLmjF.26.1340:mRNA; LmjF.26.1340:pep; LmjF.26.1340.
GeneID5652862.
KEGGlma:LMJF_26_1340.

Phylogenomic databases

HOGENOMHOG000258022.
KOK01971.
OMATRNLLPM.

Family and domain databases

Gene3D2.40.50.140. 2 hits.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR025487. DUF4379.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
PF14311. DUF4379. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ4Q960_LEIMA
AccessionPrimary (citable) accession number: Q4Q960
Entry history
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: June 11, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)