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Protein
Submitted name:

Putative DNA-directed RNA polymerase subunit

Gene

LMJF_34_0890

Organism
Leishmania major
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseImported, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA-directed RNA polymerase subunitImported (EC:2.7.7.6Imported)
Gene namesi
ORF Names:LMJF_34_0890Imported
OrganismiLeishmania majorImported
Taxonomic identifieri5664 [NCBI]
Taxonomic lineageiEukaryotaEuglenozoaKinetoplastidaTrypanosomatidaeLeishmaniinaeLeishmania
Proteomesi
  • UP000000542 Componenti: Chromosome 34

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

DNA-directed RNA polymeraseImported

Interactioni

Protein-protein interaction databases

STRINGi5664.LmjF.34.0890.

Structurei

3D structure databases

ProteinModelPortaliQ4Q3B6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3405. Eukaryota.
COG1758. LUCA.
HOGENOMiHOG000225272.
InParanoidiQ4Q3B6.
KOiK03014.

Family and domain databases

Gene3Di3.90.940.10. 1 hit.
InterProiView protein in InterPro
IPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
IPR028363. RPB6.
IPR006111. RpoK/Rpb6.
PfamiView protein in Pfam
PF01192. RNA_pol_Rpb6. 1 hit.
PIRSFiPIRSF500154. RPB6. 1 hit.
PIRSF000778. RpoK/RPB6. 1 hit.
SMARTiView protein in SMART
SM01409. RNA_pol_Rpb6. 1 hit.
SUPFAMiSSF63562. SSF63562. 1 hit.
PROSITEiView protein in PROSITE
PS01111. RNA_POL_K_14KD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4Q3B6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDHDDEDDL LSLNLGDDRD EGDSGSDIRH SGADEEDEEG GEQLPEDVAA
60 70 80 90 100
NVILSGNAQA AKGARARGIN ERVTSAVMTK YERARVLGTR ALQISMNAPV
110 120 130 140 150
AVALEGETDP LTIAVKELRE RRTPLIIRRV LPDNTYEDWS VSELLVDFDR

PADERYTNI
Length:159
Mass (Da):17,521
Last modified:July 19, 2005 - v1
Checksum:i3DA17B33150E746D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796430 Genomic DNA. Translation: CAJ07796.1.
RefSeqiXP_001686182.1. XM_001686130.1.

Genome annotation databases

EnsemblProtistsiLmjF.34.0890:mRNA; LmjF.34.0890:pep; LmjF.34.0890.
GeneDBiLmjF.34.0890:pep.
GeneIDi5654846.
KEGGilma:LMJF_34_0890.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FR796430 Genomic DNA. Translation: CAJ07796.1.
RefSeqiXP_001686182.1. XM_001686130.1.

3D structure databases

ProteinModelPortaliQ4Q3B6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5664.LmjF.34.0890.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiLmjF.34.0890:mRNA; LmjF.34.0890:pep; LmjF.34.0890.
GeneDBiLmjF.34.0890:pep.
GeneIDi5654846.
KEGGilma:LMJF_34_0890.

Phylogenomic databases

eggNOGiKOG3405. Eukaryota.
COG1758. LUCA.
HOGENOMiHOG000225272.
InParanoidiQ4Q3B6.
KOiK03014.

Family and domain databases

Gene3Di3.90.940.10. 1 hit.
InterProiView protein in InterPro
IPR020708. DNA-dir_RNA_polK_14-18kDa_CS.
IPR006110. Pol_omega/K/RPB6.
IPR012293. RNAP_RPB6_omega.
IPR028363. RPB6.
IPR006111. RpoK/Rpb6.
PfamiView protein in Pfam
PF01192. RNA_pol_Rpb6. 1 hit.
PIRSFiPIRSF500154. RPB6. 1 hit.
PIRSF000778. RpoK/RPB6. 1 hit.
SMARTiView protein in SMART
SM01409. RNA_pol_Rpb6. 1 hit.
SUPFAMiSSF63562. SSF63562. 1 hit.
PROSITEiView protein in PROSITE
PS01111. RNA_POL_K_14KD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ4Q3B6_LEIMA
AccessioniPrimary (citable) accession number: Q4Q3B6
Entry historyiIntegrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: June 7, 2017
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.