Q4PSE3 (Q4PSE3_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
MADS-box family protein EMBL AAY78839.1

Submitted name:
Protein agamous-like 101 EMBL AED93644.1

Gene names

Name:	AGL101 EMBL AED93644.1
Ordered Locus Names:	At5g27050 TAIR At5g27050
ORF Names:	AT5G27050 EMBL AED93644.1

Organism

Arabidopsis thaliana (Mouse-ear cress) EMBL AAY78839.1

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	120 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus By similarity RuleBase RU000476.
Sequence similarities	Contains 1 MADS-box domain. SAAS SAAS002100 RuleBase RU000476

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS002100 RuleBase RU000476
Cellular component	Nucleus SAAS SAAS002100 RuleBase RU000476
Ligand	DNA-binding SAAS SAAS002100 RuleBase RU000476
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW protein dimerization activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q4PSE3 [UniParc]. Last modified July 19, 2005. Version 1. Checksum: 3E4CA8B1062D412B	FASTA	120	14,189
	10 20 30 40 50 60 MFKKALELST LCNIEVCVIY YGRDGELFKT WPEDESKVRD MAERFTKLNE RERRKKRTNL 70 80 90 100 110 120 SLFLRKKILD DNKLSGKVLE MKDSLERGLR VLQDKLLLLQ PENQTKSLTR SVSSLDYVFV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F. Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	Underwood B.A., Xiao Y., Moskal W., Monaghan E., Wang W., Redman J., Wu H.C., Utterback T., Town C.D. Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DQ056693 mRNA. Translation: AAY78839.1. CP002688 Genomic DNA. Translation: AED93644.1.
IPI	IPI00521196.
RefSeq	NP_198057.1. NM_122587.1.
UniGene	At.55030.
3D structure databases
ProteinModelPortal	Q4PSE3.
SMR	Q4PSE3. Positions 1-51.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q4PSE3. 6 interactions.
STRING	Q4PSE3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT5G27050.1; AT5G27050.1; AT5G27050.
GeneID	832763.
KEGG	ath:AT5G27050.
NMPDR	fig|3702.1.peg.24908.
Organism-specific databases
TAIR	At5g27050.
Phylogenomic databases
eggNOG	KOG0014.
GeneTree	EPGT00050000009835.
ProtClustDB	CLSN2916565.
Gene expression databases
Genevestigator	Q4PSE3.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
SMART	SM00432. MADS. 1 hit. [Graphical view]
SUPFAM	SSF55455. TF_MADSbox. 1 hit.
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q4PSE3_ARATH

Accession

Primary (citable) accession number: Q4PSE3

Entry history

Integrated into UniProtKB/TrEMBL:	July 19, 2005
Last sequence update:	July 19, 2005
Last modified:	January 25, 2012
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)