Unreviewed, UniProtKB/TrEMBL Q4PSE3 (Q4PSE3_ARATH)

Names and origin

Protein names

Submitted name:
    MADS-box family protein EMBL AAY78839.1

Gene names

Ordered Locus Names:

At5g27050

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	120 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subcellular location	Nucleus By similarity. RuleBase RU000476V3
Sequence similarities	Contains 1 MADS-box domain. RuleBase RU000476V3 Spearmint SPM002100

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000476V3 Spearmint SPM002100
Cellular component	Nucleus RuleBase RU000476V3 Spearmint SPM002100
Ligand	DNA-binding RuleBase RU000476V3 Spearmint SPM002100
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
CALM	P62157	1	EBI-1238507,EBI-397403	From a different organism.
CAM1	P25854	1	EBI-1238507,EBI-1235664
CAM6	Q03509	1	EBI-1238507,EBI-1236097
CAM7	P59220	1	EBI-1238507,EBI-1236031
CML10	P30187	1	EBI-1238507,EBI-1238722
CML9	Q9S744	1	EBI-1238507,EBI-1236048

Sequences

	Sequence		Length	Mass (Da)
	Q4PSE3-1 [UniParc]. Last modified July 19, 2005. Version 1. Checksum: 3E4CA8B1062D412B	FASTA	120	14,189
	10 20 30 40 50 60 MFKKALELST LCNIEVCVIY YGRDGELFKT WPEDESKVRD MAERFTKLNE RERRKKRTNL 70 80 90 100 110 120 SLFLRKKILD DNKLSGKVLE MKDSLERGLR VLQDKLLLLQ PENQTKSLTR SVSSLDYVFV

References

[1]	Underwood B.A., Xiao Y., Moskal W., Monaghan E., Wang W., Redman J., Wu H.C., Utterback T., Town C.D. Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	DQ056693 mRNA. Translation: AAY78839.1.
IPI	IPI00521196.
RefSeq	NP_198057.1.
UniGene	At.55030
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q4PSE3. 6 interactions.
Genome annotation databases
GeneID	832763.
KEGG	ath:AT5G27050.
NMPDR	fig|3702.1.peg.24908.
Family and domain databases
InterPro	IPR002100. TF_MADSbox. [Graphical view]
Pfam	PF00319. SRF-TF. 1 hit. [Graphical view]
SMART	SM00432. MADS. 1 hit. [Graphical view]
PROSITE	PS50066. MADS_BOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q4PSE3_ARATH

Accession

Primary (citable) accession number: Q4PSE3

Entry history

Integrated into UniProtKB/TrEMBL:	July 19, 2005
Last sequence update:	July 19, 2005
Last modified:	April 14, 2009
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)