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Protein
Submitted name:

Uncharacterized protein

Gene

UM01153.1

Organism
Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. snoRNA binding Source: EnsemblFungi

GO - Biological processi

  1. endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: EnsemblFungi
  2. endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: EnsemblFungi
  3. endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Source: EnsemblFungi
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:UM01153.1Imported
OrganismiUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)Imported
Taxonomic identifieri237631 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago
ProteomesiUP000000561 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: EnsemblFungi
  2. Pwp2p-containing subcomplex of 90S preribosome Source: EnsemblFungi
  3. small-subunit processome Source: EnsemblFungi
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi5270.UM01153.1.

Structurei

3D structure databases

ProteinModelPortaliQ4PFG0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotation, WD repeatUniRule annotation

Phylogenomic databases

eggNOGiCOG2319.
HOGENOMiHOG000212524.
InParanoidiQ4PFG0.
KOiK14556.
OMAiFECGYAL.
OrthoDBiEOG77WWN8.

Family and domain databases

Gene3Di2.130.10.10. 4 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 11 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS00678. WD_REPEATS_1. 4 hits.
PS50082. WD_REPEATS_2. 8 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4PFG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRSYLRHEP TSAFGLICSA SANSILDPDT KTAFVPALED VLVWDVRRST
60 70 80 90 100
LIATWHEIGH RSKVTSLARS PTDPDTFAVG YEDGSIRLWS AETNSTSVTF
110 120 130 140 150
NGHKKAVVAL TFDSQGLRIA SASLDTDIIL WDLVAETGLY RLRGHRDAVT
160 170 180 190 200
AIAFVLLPSV SHNSDGPSSS NGIHVEPSAS GYLLSTSKDG LLKLWDLSLQ
210 220 230 240 250
HCVETVVHGS NEIWSLAVSQ DVPLAMQAYA RSQHTEDDDE DTNDRNANVD
260 270 280 290 300
GGALVLTGSS DGDLKVWEIS SGALSRGLTA VNDSVHDRTE KLIVLKGSIA
310 320 330 340 350
LSGKHRVTQI EFCGVPKRTG RAALAASSTG QGYIAVSSTD KAVQIFRLRS
360 370 380 390 400
TQEMAKKLER RRKRNKEKAD KRRANEGATP TTPYPASDPA QDQVTWTDRI
410 420 430 440 450
EPYTSVRPLA GKLKSFSLVT PRSGSAASSK FGLSVLCALT SNALEIYSVP
460 470 480 490 500
SPPRSKAEKA NPIEPVLASA LEVPGHRSDI RAVALSSDDN LLASACGAGQ
510 520 530 540 550
LKIWNVNTGR CIRTFTCGYA LSVAWLPGDQ HVLVGCKDGT LRSFDVRAGI
560 570 580 590 600
AVETLDAHQG PLWSVAVQPD GLGCVSASAD KEVKFWEFEM QVPEDDSDSD
610 620 630 640 650
SNTHVDDKLG EANGSKKAQP PPQLVLVHVR TLKMTDDVLC ARFSPNGKLL
660 670 680 690 700
ALSLLDNTVK VFFADSLKFF LSLYGHKLPV LSLDISSDSK LCVTVSADKN
710 720 730 740 750
VKIWGLDFGD CHKSIFAHNE SIMGVCFEHG MQGGGLMGGR HGESHHFWTV
760 770 780 790 800
GKDGLLKHWD GDNFQMIQQL EGHHGEVWAV APGHTGKLVV TAGADRSIRT
810 820 830 840 850
WEKTDEPLFL EEEREREMER AFESAGQSTR DDERAIGELA DGADPDAAAT
860 870 880 890 900
AGASGPEATA VSKSTRETMM AGERLVEALE TADADIAART ASRAAGQAEP
910 920 930 940 950
AYHALITAEF ESSHSRSTVD EDISAQKYVL RVVEKILPAQ LDDALLVLPF
960 970 980 990 1000
DKVVSLLTYL DYWARKEWSI PLVSRILFFL LRTHHHQIVA NRVMRPTLLD
1010 1020 1030 1040 1050
LKSHLKQALA TQKATIGFNL AALKFIKAQH IAAKTSEIYE RQGLDVDEEE
1060
IKRRIEANAA RKRKIRVA
Length:1,068
Mass (Da):116,276
Last modified:July 18, 2005 - v1
Checksum:i2BE7BE507945AB6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACP01000041 Genomic DNA. Translation: EAK81677.1.
RefSeqiXP_757300.1. XM_752207.1.

Genome annotation databases

EnsemblFungiiUM01153T0; UM01153P0; UM01153.
GeneIDi3629200.
KEGGiuma:UM01153.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACP01000041 Genomic DNA. Translation: EAK81677.1.
RefSeqiXP_757300.1. XM_752207.1.

3D structure databases

ProteinModelPortaliQ4PFG0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5270.UM01153.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiUM01153T0; UM01153P0; UM01153.
GeneIDi3629200.
KEGGiuma:UM01153.1.

Phylogenomic databases

eggNOGiCOG2319.
HOGENOMiHOG000212524.
InParanoidiQ4PFG0.
KOiK14556.
OMAiFECGYAL.
OrthoDBiEOG77WWN8.

Family and domain databases

Gene3Di2.130.10.10. 4 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 11 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS00678. WD_REPEATS_1. 4 hits.
PS50082. WD_REPEATS_2. 8 hits.
PS50294. WD_REPEATS_REGION. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis."
    Kamper J., Kahmann R., Bolker M., Ma L.J., Brefort T., Saville B.J., Banuett F., Kronstad J.W., Gold S.E., Muller O., Perlin M.H., Wosten H.A., de Vries R., Ruiz-Herrera J., Reynaga-Pena C.G., Snetselaar K., McCann M., Perez-Martin J.
    , Feldbrugge M., Basse C.W., Steinberg G., Ibeas J.I., Holloman W., Guzman P., Farman M., Stajich J.E., Sentandreu R., Gonzalez-Prieto J.M., Kennell J.C., Molina L., Schirawski J., Mendoza-Mendoza A., Greilinger D., Munch K., Rossel N., Scherer M., Vranes M., Ladendorf O., Vincon V., Fuchs U., Sandrock B., Meng S., Ho E.C., Cahill M.J., Boyce K.J., Klose J., Klosterman S.J., Deelstra H.J., Ortiz-Castellanos L., Li W., Sanchez-Alonso P., Schreier P.H., Hauser-Hahn I., Vaupel M., Koopmann E., Friedrich G., Voss H., Schluter T., Margolis J., Platt D., Swimmer C., Gnirke A., Chen F., Vysotskaia V., Mannhaupt G., Guldener U., Munsterkotter M., Haase D., Oesterheld M., Mewes H.W., Mauceli E.W., DeCaprio D., Wade C.M., Butler J., Young S., Jaffe D.B., Calvo S., Nusbaum C., Galagan J., Birren B.W.
    Nature 444:97-101(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 521 / FGSC 9021Imported.

Entry informationi

Entry nameiQ4PFG0_USTMA
AccessioniPrimary (citable) accession number: Q4PFG0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 18, 2005
Last sequence update: July 18, 2005
Last modified: March 31, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.