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Protein
Submitted name:

Uncharacterized protein

Gene

UM02403.1

Organism
Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. tRNA-intron endonuclease activity Source: InterPro

GO - Biological processi

  1. tRNA-type intron splice site recognition and cleavage Source: EnsemblFungi
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:UM02403.1Imported
OrganismiUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)Imported
Taxonomic identifieri237631 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago
ProteomesiUP000000561 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. mitochondrial outer membrane Source: EnsemblFungi
  2. tRNA-intron endonuclease complex Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi5270.UM02403.1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1676.
HOGENOMiHOG000209011.
InParanoidiQ4PBW0.
KOiK15322.
OMAiVIAVYIT.
OrthoDBiEOG7SXWFH.

Family and domain databases

Gene3Di3.40.1350.10. 1 hit.
InterProiIPR011856. tRNA_endonuc-like_dom.
IPR006677. tRNA_intron_Endonuc_cat-like.
IPR006678. tRNA_intron_Endonuc_N.
IPR006676. tRNA_splic.
IPR016589. tRNA_splic_SEN2.
[Graphical view]
PANTHERiPTHR21227:SF0. PTHR21227:SF0. 1 hit.
PfamiPF01974. tRNA_int_endo. 1 hit.
PF02778. tRNA_int_endo_N. 1 hit.
[Graphical view]
PIRSFiPIRSF011789. tRNA_splic_SEN2. 1 hit.
SUPFAMiSSF53032. SSF53032. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4PBW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAGKKATTQ KNQLYSKPIP IALDNSDDAD NDKISSETTL WSALCTLLTL
60 70 80 90 100
GFYARTGQSR NTVGSSTKSK EKVSVHYDRQ LQTIWVEDLD EGIRLLWQRG
110 120 130 140 150
FFGKGNLSRS EPTWRQRKVN EIDALRKGRM TAEQLTQQRR EERKALKIER
160 170 180 190 200
ARAAVRAGQQ LPDGILALGG EITDADRAPG ASHDRLMADI ERQVEEQLDG
210 220 230 240 250
EDAAEEDKKN AQELWTGQEE VPDIVPGVAR IKGLKYFAEE VKANQARKAM
260 270 280 290 300
QSTNGDDSGT AAAQDNVEDD NGTGDIDVVD FERMQLSLVE AFFLSSMFGC
310 320 330 340 350
LDIHTGEGSV DAQPLELDDF YKECLLSRLP QTLLDLRERG LADRYLTKLY
360 370 380 390 400
ARPDNPFLID YVAYHHFRSL GWTVKTGVKF CVDMLLYKRG PVFSHAEFAV
410 420 430 440 450
VVIPSYEDAQ DQESSPFALH PNAGRKDWTW FSTINRVQSQ VLKTLILAHV
460 470 480 490
FVPSSKRCRP ETLATPEAFF TSLREGKSYA VKEVAIRRWV PARMKP
Length:496
Mass (Da):55,825
Last modified:July 19, 2005 - v1
Checksum:iD36B1E4D33056FF7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACP01000083 Genomic DNA. Translation: EAK83441.1.
RefSeqiXP_758550.1. XM_753457.1.

Genome annotation databases

EnsemblFungiiUM02403T0; UM02403P0; UM02403.
GeneIDi3630459.
KEGGiuma:UM02403.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACP01000083 Genomic DNA. Translation: EAK83441.1.
RefSeqiXP_758550.1. XM_753457.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi5270.UM02403.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiUM02403T0; UM02403P0; UM02403.
GeneIDi3630459.
KEGGiuma:UM02403.1.

Phylogenomic databases

eggNOGiCOG1676.
HOGENOMiHOG000209011.
InParanoidiQ4PBW0.
KOiK15322.
OMAiVIAVYIT.
OrthoDBiEOG7SXWFH.

Family and domain databases

Gene3Di3.40.1350.10. 1 hit.
InterProiIPR011856. tRNA_endonuc-like_dom.
IPR006677. tRNA_intron_Endonuc_cat-like.
IPR006678. tRNA_intron_Endonuc_N.
IPR006676. tRNA_splic.
IPR016589. tRNA_splic_SEN2.
[Graphical view]
PANTHERiPTHR21227:SF0. PTHR21227:SF0. 1 hit.
PfamiPF01974. tRNA_int_endo. 1 hit.
PF02778. tRNA_int_endo_N. 1 hit.
[Graphical view]
PIRSFiPIRSF011789. tRNA_splic_SEN2. 1 hit.
SUPFAMiSSF53032. SSF53032. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis."
    Kamper J., Kahmann R., Bolker M., Ma L.J., Brefort T., Saville B.J., Banuett F., Kronstad J.W., Gold S.E., Muller O., Perlin M.H., Wosten H.A., de Vries R., Ruiz-Herrera J., Reynaga-Pena C.G., Snetselaar K., McCann M., Perez-Martin J.
    , Feldbrugge M., Basse C.W., Steinberg G., Ibeas J.I., Holloman W., Guzman P., Farman M., Stajich J.E., Sentandreu R., Gonzalez-Prieto J.M., Kennell J.C., Molina L., Schirawski J., Mendoza-Mendoza A., Greilinger D., Munch K., Rossel N., Scherer M., Vranes M., Ladendorf O., Vincon V., Fuchs U., Sandrock B., Meng S., Ho E.C., Cahill M.J., Boyce K.J., Klose J., Klosterman S.J., Deelstra H.J., Ortiz-Castellanos L., Li W., Sanchez-Alonso P., Schreier P.H., Hauser-Hahn I., Vaupel M., Koopmann E., Friedrich G., Voss H., Schluter T., Margolis J., Platt D., Swimmer C., Gnirke A., Chen F., Vysotskaia V., Mannhaupt G., Guldener U., Munsterkotter M., Haase D., Oesterheld M., Mewes H.W., Mauceli E.W., DeCaprio D., Wade C.M., Butler J., Young S., Jaffe D.B., Calvo S., Nusbaum C., Galagan J., Birren B.W.
    Nature 444:97-101(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 521 / FGSC 9021Imported.

Entry informationi

Entry nameiQ4PBW0_USTMA
AccessioniPrimary (citable) accession number: Q4PBW0
Entry historyi
Integrated into UniProtKB/TrEMBL: July 19, 2005
Last sequence update: July 19, 2005
Last modified: April 1, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.