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Protein

Serine/threonine-protein kinase SSN3

Gene

SSN3

Organism
Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Protein inferred from homologyi

Functioni

Component of the srb8-11 complex. The srb8-11 complex is a regulatory module of the Mediator complex which is itself dependent transcription. The srb8-11 complex may be involved in the transcriptional repression of a subset of genes regulated by Mediator. It may inhibit the association of the Mediator complex with RNA polymerase II to form the holoenzyme complex. The srb8-11 complex phosphorylates the C-terminal domain (CTD) of the largest subunit of RNA polymerase II (By similarity).By similarity

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.
ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei201 – 2011ATPPROSITE-ProRule annotation
Active sitei304 – 3041Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi72 – 809ATPPROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Kinase, Repressor, Serine/threonine-protein kinase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Serine/threonine-protein kinase SSN3 (EC:2.7.11.22, EC:2.7.11.23)
Alternative name(s):
Cyclin-dependent kinase 8
Gene namesi
Name:SSN3
Synonyms:CDK8
ORF Names:UMAG_12208
OrganismiUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Taxonomic identifieri237631 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago
Proteomesi
  • UP000000561 Componentsi: Chromosome 8, Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 713713Serine/threonine-protein kinase SSN3PRO_0000312951Add
BLAST

Interactioni

Subunit structurei

Component of the srb8-11 complex, a regulatory module of the Mediator complex.By similarity

Structurei

3D structure databases

ProteinModelPortaliQ4P9T2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini66 – 484419Protein kinasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 protein kinase domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiQ4P9T2.
OMAiIHFHSHP.
OrthoDBiEOG7K3TWD.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 2 hits.
PROSITEiPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q4P9T2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDQIRASGY FYSQTDDPFA AAFWSQFQDP HVLAARHIPA DSSASAAMKA
60 70 80 90 100
YREYRDRVRK PVLATYTILG FLSSGTYGRV YKARLRTPPQ LASSSGTAGI
110 120 130 140 150
ANANAGTGSG TATVGSGAST AKKRGGLLQQ HQLLDSPSSS LHATPKSVAD
160 170 180 190 200
GAGVGVNGTP SASPSLSASL GTSTANAPGG SDNTLQLSSN ELPDTQIYAI
210 220 230 240 250
KKFKPDSKET DATIYTGISQ SAMREISLNR ELSHVNIVTL HQVMLEDKAI
260 270 280 290 300
YMVFEYAEHD LLQIIHYHST ALRAPIPLAV LKSLLWQLIN GVAYLHANWI
310 320 330 340 350
LHRDLKPANI LVTSQGVVKI GDLGLARLYS SPLQSLYNGD KVVVTIWYRA
360 370 380 390 400
PELLLGARHY TTAIDMWSVG CIWGELLALR PMFKGEEAKM DPKTKAAPFQ
410 420 430 440 450
TDQLKRIVEV LGTPNKDRWP AIESMPDYKG WWPHLRLDNY PKTLSRWYAT
460 470 480 490 500
RNKGDDGYEL FNSLLQYDPE QRLTANQALE HAWFTAQDPK PTANAFSSLA
510 520 530 540 550
KPHATYPNRR VIQDDMDPKM KSNYVPPIKS HHMQPWHQVN LNSSQPHRLA
560 570 580 590 600
QLMYQQEQMR HQQMQTQAPA PAPAQPPAAT AVTGRLGHAV GAGSSAVGTA
610 620 630 640 650
ANVGGPAAPP PIAIGSTAGT GGAIGIQSSA ASTAPSQHMY NNNPLITIAG
660 670 680 690 700
TNGGTISNPA TVRSSHSIGS TESITPTTSS QPIPAQPSSA PLARTTNLVA
710
TATRNQQRKR QRN
Length:713
Mass (Da):77,024
Last modified:September 16, 2015 - v2
Checksum:i5674199753DF565A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003147 Genomic DNA. Translation: KIS68558.1.
RefSeqiXP_011389845.1. XM_011391543.1.

Genome annotation databases

EnsemblFungiiUM03131T0; UM03131P0; UM03131.
GeneIDi23567961.
KEGGiuma:UMAG_12208.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003147 Genomic DNA. Translation: KIS68558.1.
RefSeqiXP_011389845.1. XM_011391543.1.

3D structure databases

ProteinModelPortaliQ4P9T2.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiUM03131T0; UM03131P0; UM03131.
GeneIDi23567961.
KEGGiuma:UMAG_12208.

Phylogenomic databases

InParanoidiQ4P9T2.
OMAiIHFHSHP.
OrthoDBiEOG7K3TWD.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 2 hits.
PROSITEiPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis."
    Kaemper J., Kahmann R., Boelker M., Ma L.-J., Brefort T., Saville B.J., Banuett F., Kronstad J.W., Gold S.E., Mueller O., Perlin M.H., Woesten H.A.B., de Vries R., Ruiz-Herrera J., Reynaga-Pena C.G., Snetselaar K., McCann M., Perez-Martin J.
    , Feldbruegge M., Basse C.W., Steinberg G., Ibeas J.I., Holloman W., Guzman P., Farman M.L., Stajich J.E., Sentandreu R., Gonzalez-Prieto J.M., Kennell J.C., Molina L., Schirawski J., Mendoza-Mendoza A., Greilinger D., Muench K., Roessel N., Scherer M., Vranes M., Ladendorf O., Vincon V., Fuchs U., Sandrock B., Meng S., Ho E.C.H., Cahill M.J., Boyce K.J., Klose J., Klosterman S.J., Deelstra H.J., Ortiz-Castellanos L., Li W., Sanchez-Alonso P., Schreier P.H., Haeuser-Hahn I., Vaupel M., Koopmann E., Friedrich G., Voss H., Schlueter T., Margolis J., Platt D., Swimmer C., Gnirke A., Chen F., Vysotskaia V., Mannhaupt G., Gueldener U., Muensterkoetter M., Haase D., Oesterheld M., Mewes H.-W., Mauceli E.W., DeCaprio D., Wade C.M., Butler J., Young S.K., Jaffe D.B., Calvo S.E., Nusbaum C., Galagan J.E., Birren B.W.
    Nature 444:97-101(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 521 / FGSC 9021.
  2. Gueldener U., Muensterkoetter M., Walter M.C., Mannhaupt G., Kahmann R.
    Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: 521 / FGSC 9021.

Entry informationi

Entry nameiSSN3_USTMA
AccessioniPrimary (citable) accession number: Q4P9T2
Secondary accession number(s): A0A0D1CPR6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: September 16, 2015
Last modified: May 11, 2016
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.