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Protein
Submitted name:

HMG transcription factor SOX17

Gene

sox17

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi62 – 130HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
HMG transcription factor SOX17Imported
Gene namesi
Name:sox17Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ4LES8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini62 – 130HMG boxInterPro annotationAdd BLAST69
Domaini287 – 409Sox C-terminalInterPro annotationAdd BLAST123

Phylogenomic databases

HOVERGENiHBG000517.
PhylomeDBiQ4LES8.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR033392. Sox7/17/18_central.
IPR021934. Sox_C.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12067. Sox17_18_mid. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.

Sequencei

Sequence statusi: Complete.

Q4LES8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS SEEQAQGRGA LPAMMPALGP CPWAEALSPP GEAKAKGEAG
60 70 80 90 100
ATGGRGKGEA RIRRPMNAFM VWAKDERKRL AQQNPDLHNA ELSKMLGKSW
110 120 130 140 150
KALSLAEKRP FVEEAERLRV QHMQDHPNYK YRPRRRKQVK RLKRAEGGFA
160 170 180 190 200
QHGPAEAAPP ALGPDGGGVG TCGESLALPY AERGYAAGPG RYRDCPPLGA
210 220 230 240 250
AFDGFGLPTP DPSPLDAAHG EAPFFAPGPP DECAPGPYGG YGPAAAGDFA
260 270 280 290 300
AAGAGESPAG AALRRHQHQH HQPHQHSHPA AGELGPGGAL PGLLGCPAPP
310 320 330 340 350
HYYGQLCPGR GPPAPVPVPV AVALGAQPSP PPEAAACREP LEHLPQEELL
360 370 380 390 400
GEVDRSEFEQ YLRFACKAEL GPPFAGHDVA GLASPEAAGP LSAVVSDASS
410
AVYYCGYADG
Length:410
Mass (Da):42,596
Last modified:August 2, 2005 - v1
Checksum:i58AC50955B6E7AFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB197131 mRNA. Translation: BAE06069.1.
RefSeqiNP_001034415.1. NM_001039326.1.
UniGeneiGga.7231.

Genome annotation databases

GeneIDi428534.

Similar proteinsi

Entry informationi

Entry nameiQ4LES8_CHICK
AccessioniPrimary (citable) accession number: Q4LES8
Entry historyiIntegrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: October 25, 2017
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)