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Protein
Submitted name:

PPFIA2 variant protein

Gene

PPFIA2 variant protein

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
PPFIA2 variant proteinImported
Gene namesi
Name:PPFIA2 variant proteinImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

  1. synapse Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ4LE62.

Expressioni

Gene expression databases

ExpressionAtlasiQ4LE62. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ4LE62.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000017513.
HOVERGENiHBG052330.

Family and domain databases

Gene3Di1.10.150.50. 2 hits.
InterProiIPR029515. Liprin.
IPR030441. PPFIA2.
IPR001660. SAM.
IPR013761. SAM/pointed.
IPR011510. SAM_2.
IPR021129. SAM_type1.
[Graphical view]
PANTHERiPTHR12587. PTHR12587. 1 hit.
PTHR12587:SF6. PTHR12587:SF6. 1 hit.
PfamiPF00536. SAM_1. 2 hits.
PF07647. SAM_2. 1 hit.
[Graphical view]
SMARTiSM00454. SAM. 3 hits.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 3 hits.
PROSITEiPS50105. SAM_DOMAIN. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q4LE62-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
RSKDPKSQTL AMMCEVMPTI NEDTPMSQRG SQSSGSDSDS HFEQLMVNML
60 70 80 90 100
DERDRLLDTL RETQESLSLA QQRLQDVIYD RDSLQRQLNS ALPQDIESLT
110 120 130 140 150
GGLAGSKGAD PPEFAALTKE LNACREQLLE KEEEISELKA ERNNTRLLLE
160 170 180 190 200
HLECLVSRHE RSLRMTVVKR QAQSPSGVSS EVEVLKALKS LFEHHKALDE
210 220 230 240 250
KVRERLRVSL ERVSALEEEL AAANQEIVAL REQNVHIQRK MASSEGSTES
260 270 280 290 300
EHLEGMEPGQ KVHEKRLSNG SIDSTDETSQ IVELQELLEK QNYEMAQMKE
310 320 330 340 350
RLAALSSRVG EVEQEAETAR KDLIKTEEMN TKYQRDIREA MAQKEDMEER
360 370 380 390 400
ITTLEKRYLS AQRESTSIHD MNDKLENELA NKEAILRQME EKNRQLQERL
410 420 430 440 450
ELAEQKLQQT MRKAETLPEV EAELAQRIAA LTKAEERHGN IEERMRHLEG
460 470 480 490 500
QLEEKNQELQ RARQREKMNE EHNKRLSDTV DRLLTESNER LQLHLKERMA
510 520 530 540 550
ALEEKNVLIQ ESETFRKNLE ESLHDKERLA EEIEKLRSEL DQLKMRTGSL
560 570 580 590 600
IEPTIPRTHL DTSAELRYSV GSLVDSQSDY RTTKVIRRPR RGRMGVRRDE
610 620 630 640 650
PKVKSLGDHE WNRTQQIGVL SSHPFESDTE MSDIDDDDRE TIFSSMDLLS
660 670 680 690 700
PSGHSDAQTL AMMLQEQLDA INKEIRLIQE EKESTELRAE EIENRVASVS
710 720 730 740 750
LEGLNLARVH PGTSITASVT ASSLASSSPP SGHSTPKLTP RSPAREMDRM
760 770 780 790 800
GVMTLPSDLR KHRRKIAVVE EDGREDKATI KCETSPPPTP RALRMTHTLP
810 820 830 840 850
SSYHNDARSS LSVSLEPESL GLGSANSSQD SLHKAPKKKG IKSSIGRLFG
860 870 880 890 900
KKEKARLGQL RGFMETEAAA QESLGLGKLG TQAEKDRRLK KKHELLEEAR
910 920 930 940 950
RKGLPFAQWD GPTVVAWLEL WLGMPAWYVA ACRANVKSGA IMSALSDTEI
960 970 980 990 1000
QREIGISNPL HRLKLRLAIQ EMVSLTSPSA PPTSRTPSGN VWVTHEEMEN
1010 1020 1030 1040 1050
LAAPAKTKES EEGSWAQCPV FLQTLAYGDM NHEWIGNEWL PSLGLPQYRS
1060 1070 1080 1090 1100
YFMECLVDAR MLDHLTKKDL RVHLKMVDSF HRTSLQYGIM CLKRLNYDRK
1110 1120 1130 1140 1150
ELERRREASQ HEIKDVLVWS NDRVIRWIQA IGLREYANNI LESGVHGSLI
1160 1170 1180 1190 1200
ALDENFDYSS LALLLQIPTQ NTQARQILER EYNNLLALGT ERRLDESDDK
1210 1220 1230 1240 1250
NFRRGSTWRR QFPPREVHGI SMMPGSSETL PAGFRLTTTS GQSRKMTTDD

GVFSVYST
Length:1,258
Mass (Da):143,321
Last modified:August 1, 2005 - v1
Checksum:iC9676A074BF3FE15
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB210009 mRNA. Translation: BAE06091.1.
RefSeqiNP_001207402.1. NM_001220473.2.
NP_001207403.1. NM_001220474.2.
NP_001207404.1. NM_001220475.2.
NP_001207405.1. NM_001220476.2.
UniGeneiHs.506216.
Hs.737103.

Genome annotation databases

GeneIDi8499.
KEGGihsa:8499.
UCSCiuc031qim.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB210009 mRNA. Translation: BAE06091.1.
RefSeqiNP_001207402.1. NM_001220473.2.
NP_001207403.1. NM_001220474.2.
NP_001207404.1. NM_001220475.2.
NP_001207405.1. NM_001220476.2.
UniGeneiHs.506216.
Hs.737103.

3D structure databases

ProteinModelPortaliQ4LE62.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ4LE62.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi8499.
KEGGihsa:8499.
UCSCiuc031qim.1. human.

Organism-specific databases

CTDi8499.

Phylogenomic databases

HOGENOMiHOG000017513.
HOVERGENiHBG052330.

Miscellaneous databases

ChiTaRSiPPFIA2. human.
GenomeRNAii8499.
NextBioi31801.

Gene expression databases

ExpressionAtlasiQ4LE62. baseline.

Family and domain databases

Gene3Di1.10.150.50. 2 hits.
InterProiIPR029515. Liprin.
IPR030441. PPFIA2.
IPR001660. SAM.
IPR013761. SAM/pointed.
IPR011510. SAM_2.
IPR021129. SAM_type1.
[Graphical view]
PANTHERiPTHR12587. PTHR12587. 1 hit.
PTHR12587:SF6. PTHR12587:SF6. 1 hit.
PfamiPF00536. SAM_1. 2 hits.
PF07647. SAM_2. 1 hit.
[Graphical view]
SMARTiSM00454. SAM. 3 hits.
[Graphical view]
SUPFAMiSSF47769. SSF47769. 3 hits.
PROSITEiPS50105. SAM_DOMAIN. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Preparation of a set of expression-ready clones of mammalian long cDNAs encoding large proteins by the ORF trap cloning method."
    Nakajima D., Saito K., Yamakawa H., Kikuno R.F., Nakayama M., Ohara R., Okazaki N., Koga H., Nagase T., Ohara O.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.

Entry informationi

Entry nameiQ4LE62_HUMAN
AccessioniPrimary (citable) accession number: Q4LE62
Entry historyi
Integrated into UniProtKB/TrEMBL: August 1, 2005
Last sequence update: August 1, 2005
Last modified: March 31, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.