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Protein

Probable transglycosylase SceD

Gene

sceD

Organism
Staphylococcus haemolyticus (strain JCSC1435)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Is able to cleave peptidoglycan and affects clumping and separation of bacterial cells.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable transglycosylase SceD (EC:3.2.-.-)
Gene namesi
Name:sceD
Ordered Locus Names:SH0939
OrganismiStaphylococcus haemolyticus (strain JCSC1435)
Taxonomic identifieri279808 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000000543 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_000032032027 – 235Probable transglycosylase SceDAdd BLAST209

Interactioni

Protein-protein interaction databases

STRINGi279808.SH0939.

Structurei

3D structure databases

ProteinModelPortaliQ4L7X7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi83 – 136Gln-richAdd BLAST54

Sequence similaritiesi

Belongs to the transglycosylase family. SceD subfamily.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000280170.
OMAiAGPSQWV.
OrthoDBiPOG091H095J.

Family and domain databases

InterProiIPR023346. Lysozyme-like_dom.
IPR010618. Transglycosylas.
[Graphical view]
PfamiPF06737. Transglycosylas. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q4L7X7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKTIIASSL AVGLGVVAGN AGHADASEAQ VNKAELAQLA QSNDQSLNDS
60 70 80 90 100
PIQEGAYNVT FDYEGFTYHF ESDGTNWSWN YAQSGQASQQ QDVSAQASTV
110 120 130 140 150
SNQTSAEQVG SQQQSSQAQP TQTQQAPQTE QTQQPQTEAT TSNSSSSNNN
160 170 180 190 200
ASSGSSVNVN SHLQQIAQRE SGGDITAINP SSGAAGKYQF LQSTWDSVAP
210 220 230
DEYKGVSPAQ APEDVQDAAA VKLYNTAGAS QWVTA
Length:235
Mass (Da):24,616
Last modified:August 2, 2005 - v1
Checksum:i369EF4064E621DC6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006716 Genomic DNA. Translation: BAE04248.1.
RefSeqiWP_011275250.1. NC_007168.1.

Genome annotation databases

EnsemblBacteriaiBAE04248; BAE04248; SH0939.
GeneIDi24246191.
KEGGisha:SH0939.
PATRICi19617919. VBIStaHae67511_0926.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006716 Genomic DNA. Translation: BAE04248.1.
RefSeqiWP_011275250.1. NC_007168.1.

3D structure databases

ProteinModelPortaliQ4L7X7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi279808.SH0939.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE04248; BAE04248; SH0939.
GeneIDi24246191.
KEGGisha:SH0939.
PATRICi19617919. VBIStaHae67511_0926.

Phylogenomic databases

HOGENOMiHOG000280170.
OMAiAGPSQWV.
OrthoDBiPOG091H095J.

Family and domain databases

InterProiIPR023346. Lysozyme-like_dom.
IPR010618. Transglycosylas.
[Graphical view]
PfamiPF06737. Transglycosylas. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiSCED_STAHJ
AccessioniPrimary (citable) accession number: Q4L7X7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: August 2, 2005
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.